Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMK1P53667 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMK1P53667 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMK1P53667 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
LIMK1P53667 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMK1P53667 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LIMK1P53667 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMK1P53667 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.21■□□□□ 0.51
LIMK1P53667 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMK1P53667 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.21■□□□□ 0.51
LIMK1P53667 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
LIMK1P53667 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMK1P53667 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.21■□□□□ 0.51
LIMK1P53667 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMK1P53667 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.21■□□□□ 0.51
LIMK1P53667 AC124864.1-201ENST00000623408 392 ntBASIC18.21■□□□□ 0.51
LIMK1P53667 AC148477.8-201ENST00000624298 468 ntBASIC18.21■□□□□ 0.51
LIMK1P53667 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.21■□□□□ 0.51
LIMK1P53667 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.5
LIMK1P53667 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
LIMK1P53667 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.5
LIMK1P53667 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMK1P53667 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMK1P53667 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMK1P53667 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
LIMK1P53667 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMK1P53667 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 MIR564-202ENST00000385049 94 ntBASIC18.2■□□□□ 0.5
LIMK1P53667 MIR940-201ENST00000401276 94 ntBASIC18.2■□□□□ 0.5
LIMK1P53667 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 PGAM5P1-201ENST00000518923 814 ntBASIC18.2■□□□□ 0.5
LIMK1P53667 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMK1P53667 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
LIMK1P53667 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.2■□□□□ 0.5
LIMK1P53667 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.2■□□□□ 0.5
LIMK1P53667 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.2■□□□□ 0.5
LIMK1P53667 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LIMK1P53667 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
LIMK1P53667 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LIMK1P53667 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMK1P53667 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMK1P53667 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMK1P53667 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMK1P53667 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
LIMK1P53667 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMK1P53667 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
LIMK1P53667 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
LIMK1P53667 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMK1P53667 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMK1P53667 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMK1P53667 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
LIMK1P53667 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMK1P53667 IGHGP-201ENST00000390555 1178 ntBASIC18.19■□□□□ 0.5
LIMK1P53667 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LIMK1P53667 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMK1P53667 AC073648.2-201ENST00000510116 352 ntBASIC18.19■□□□□ 0.5
LIMK1P53667 AC104390.1-201ENST00000555663 520 ntBASIC18.19■□□□□ 0.5
LIMK1P53667 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMK1P53667 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMK1P53667 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.19■□□□□ 0.5
LIMK1P53667 AC027796.2-201ENST00000575326 344 ntBASIC18.19■□□□□ 0.5
LIMK1P53667 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.19■□□□□ 0.5
LIMK1P53667 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.19■□□□□ 0.5
LIMK1P53667 AC010240.3-201ENST00000607688 395 ntBASIC18.19■□□□□ 0.5
LIMK1P53667 MIR7706-201ENST00000613747 67 ntBASIC18.19■□□□□ 0.5
LIMK1P53667 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
LIMK1P53667 AC055717.3-201ENST00000622967 595 ntBASIC18.19■□□□□ 0.5
LIMK1P53667 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
LIMK1P53667 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMK1P53667 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LIMK1P53667 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms