Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
HOXD3P31249 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
HOXD3P31249 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HOXD3P31249 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD3P31249 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
HOXD3P31249 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC14.27□□□□□ -0.12
HOXD3P31249 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.12
HOXD3P31249 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
HOXD3P31249 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC14.27□□□□□ -0.12
HOXD3P31249 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
HOXD3P31249 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC14.27□□□□□ -0.12
HOXD3P31249 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC14.27□□□□□ -0.12
HOXD3P31249 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC14.27□□□□□ -0.12
HOXD3P31249 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD3P31249 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXD3P31249 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 AL645929.1-201ENST00000420084 975 ntBASIC14.27□□□□□ -0.13
HOXD3P31249 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXD3P31249 AC092597.1-201ENST00000487352 616 ntBASIC14.27□□□□□ -0.13
HOXD3P31249 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC14.27□□□□□ -0.13
HOXD3P31249 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXD3P31249 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXD3P31249 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXD3P31249 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HOXD3P31249 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXD3P31249 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXD3P31249 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXD3P31249 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXD3P31249 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXD3P31249 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD3P31249 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXD3P31249 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
HOXD3P31249 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HOXD3P31249 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXD3P31249 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HOXD3P31249 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC14.26□□□□□ -0.13
HOXD3P31249 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXD3P31249 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 SPDYE13P-201ENST00000445314 798 ntBASIC14.26□□□□□ -0.13
HOXD3P31249 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXD3P31249 SEC1P-202ENST00000473944 940 ntBASIC14.26□□□□□ -0.13
HOXD3P31249 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXD3P31249 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXD3P31249 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXD3P31249 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXD3P31249 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD3P31249 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD3P31249 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD3P31249 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD3P31249 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXD3P31249 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXD3P31249 HBZP1-201ENST00000354915 429 ntBASIC14.25□□□□□ -0.13
HOXD3P31249 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXD3P31249 ATP5G2P1-201ENST00000433580 426 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms