Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
MSX1P28360 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 SNCG-201ENST00000348795 684 ntTSL 2 BASIC16.89■□□□□ 0.29
MSX1P28360 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.89■□□□□ 0.29
MSX1P28360 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.89■□□□□ 0.29
MSX1P28360 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
MSX1P28360 AL441883.1-201ENST00000566170 1045 ntBASIC16.89■□□□□ 0.29
MSX1P28360 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
MSX1P28360 AL023973.1-201ENST00000624619 620 ntBASIC16.89■□□□□ 0.29
MSX1P28360 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.89■□□□□ 0.29
MSX1P28360 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
MSX1P28360 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
MSX1P28360 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 MYLKP1-201ENST00000509077 1580 ntBASIC16.89■□□□□ 0.29
MSX1P28360 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
MSX1P28360 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX1P28360 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX1P28360 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX1P28360 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
MSX1P28360 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSX1P28360 KRT8P50-201ENST00000562022 1438 ntBASIC16.88■□□□□ 0.29
MSX1P28360 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.88■□□□□ 0.29
MSX1P28360 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX1P28360 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX1P28360 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.88■□□□□ 0.29
MSX1P28360 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
MSX1P28360 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX1P28360 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.88■□□□□ 0.29
MSX1P28360 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX1P28360 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX1P28360 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX1P28360 ETFA-216ENST00000560726 942 ntTSL 3 BASIC16.88■□□□□ 0.29
MSX1P28360 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.88■□□□□ 0.29
MSX1P28360 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.88■□□□□ 0.29
MSX1P28360 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
MSX1P28360 AL121894.2-201ENST00000602977 491 ntBASIC16.88■□□□□ 0.29
MSX1P28360 AC093458.2-201ENST00000623150 629 ntBASIC16.88■□□□□ 0.29
MSX1P28360 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX1P28360 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX1P28360 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
MSX1P28360 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.87■□□□□ 0.29
MSX1P28360 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
MSX1P28360 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.87■□□□□ 0.29
MSX1P28360 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC16.87■□□□□ 0.29
MSX1P28360 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.87■□□□□ 0.29
MSX1P28360 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.87■□□□□ 0.29
MSX1P28360 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.87■□□□□ 0.29
MSX1P28360 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
MSX1P28360 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
MSX1P28360 AC005332.1-201ENST00000577698 1310 ntBASIC16.87■□□□□ 0.29
MSX1P28360 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
MSX1P28360 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
MSX1P28360 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.87■□□□□ 0.29
MSX1P28360 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
MSX1P28360 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
MSX1P28360 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.86■□□□□ 0.29
MSX1P28360 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.86■□□□□ 0.29
MSX1P28360 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
MSX1P28360 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
MSX1P28360 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.86■□□□□ 0.29
MSX1P28360 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.86■□□□□ 0.29
MSX1P28360 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
MSX1P28360 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
MSX1P28360 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.86■□□□□ 0.29
MSX1P28360 AC034232.1-201ENST00000506026 1064 ntBASIC16.86■□□□□ 0.29
MSX1P28360 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms