Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DOAP06340 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HLA-DOAP06340 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
HLA-DOAP06340 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 TSPY19P-201ENST00000418461 509 ntBASIC21.71■■□□□ 1.07
HLA-DOAP06340 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 TSPY18P-201ENST00000441642 509 ntBASIC21.71■■□□□ 1.07
HLA-DOAP06340 RN7SL606P-201ENST00000472779 293 ntBASIC21.71■■□□□ 1.07
HLA-DOAP06340 FOSL1P1-201ENST00000511041 816 ntBASIC21.71■■□□□ 1.07
HLA-DOAP06340 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 AC004263.2-201ENST00000617183 678 ntBASIC21.71■■□□□ 1.07
HLA-DOAP06340 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
HLA-DOAP06340 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HLA-DOAP06340 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.07
HLA-DOAP06340 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.7■■□□□ 1.07
HLA-DOAP06340 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.07
HLA-DOAP06340 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
HLA-DOAP06340 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC21.7■■□□□ 1.06
HLA-DOAP06340 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC21.7■■□□□ 1.06
HLA-DOAP06340 AC091304.2-201ENST00000564639 760 ntBASIC21.7■■□□□ 1.06
HLA-DOAP06340 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC21.7■■□□□ 1.06
HLA-DOAP06340 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HLA-DOAP06340 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.7■■□□□ 1.06
HLA-DOAP06340 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
HLA-DOAP06340 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
HLA-DOAP06340 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
HLA-DOAP06340 LINC00167-201ENST00000530583 1419 ntBASIC21.7■■□□□ 1.06
HLA-DOAP06340 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
HLA-DOAP06340 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 UNC93B7-201ENST00000509439 705 ntBASIC21.69■■□□□ 1.06
HLA-DOAP06340 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 LINC01711-201ENST00000598340 967 ntBASIC21.69■■□□□ 1.06
HLA-DOAP06340 IFNL4P1-201ENST00000607083 540 ntBASIC21.69■■□□□ 1.06
HLA-DOAP06340 AL732292.2-201ENST00000609649 430 ntBASIC21.69■■□□□ 1.06
HLA-DOAP06340 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.69■■□□□ 1.06
HLA-DOAP06340 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HLA-DOAP06340 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.69■■□□□ 1.06
HLA-DOAP06340 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms