Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.49■■□□□ 1.03
COL2A1P02458 PENK-208ENST00000523051 772 ntTSL 5 BASIC21.49■■□□□ 1.03
COL2A1P02458 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC21.49■■□□□ 1.03
COL2A1P02458 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC21.49■■□□□ 1.03
COL2A1P02458 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC21.49■■□□□ 1.03
COL2A1P02458 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC21.49■■□□□ 1.03
COL2A1P02458 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
COL2A1P02458 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL2A1P02458 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC21.49■■□□□ 1.03
COL2A1P02458 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC21.49■■□□□ 1.03
COL2A1P02458 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL2A1P02458 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC21.48■■□□□ 1.03
COL2A1P02458 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL2A1P02458 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL2A1P02458 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL2A1P02458 AL022342.1-201ENST00000400363 863 ntBASIC21.48■■□□□ 1.03
COL2A1P02458 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
COL2A1P02458 ANO7L1-203ENST00000602586 1720 ntBASIC21.48■■□□□ 1.03
COL2A1P02458 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
COL2A1P02458 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.48■■□□□ 1.03
COL2A1P02458 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL2A1P02458 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC21.48■■□□□ 1.03
COL2A1P02458 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL2A1P02458 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
COL2A1P02458 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL2A1P02458 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
COL2A1P02458 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL2A1P02458 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC21.47■■□□□ 1.03
COL2A1P02458 MIR5100-201ENST00000579544 119 ntBASIC21.47■■□□□ 1.03
COL2A1P02458 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL2A1P02458 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.47■■□□□ 1.03
COL2A1P02458 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL2A1P02458 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL2A1P02458 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL2A1P02458 AC116562.4-201ENST00000641316 2276 ntBASIC21.47■■□□□ 1.03
COL2A1P02458 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
COL2A1P02458 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
COL2A1P02458 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
COL2A1P02458 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL2A1P02458 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL2A1P02458 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL2A1P02458 MTCL1P1-201ENST00000446207 792 ntBASIC21.46■■□□□ 1.03
COL2A1P02458 AC011467.2-201ENST00000598425 242 ntBASIC21.46■■□□□ 1.03
COL2A1P02458 AL591684.3-201ENST00000605187 298 ntBASIC21.46■■□□□ 1.03
COL2A1P02458 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.46■■□□□ 1.03
COL2A1P02458 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL2A1P02458 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL2A1P02458 TP73-AS1-210ENST00000637775 1455 ntBASIC21.46■■□□□ 1.03
COL2A1P02458 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL2A1P02458 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL2A1P02458 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL2A1P02458 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.46■■□□□ 1.03
COL2A1P02458 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
COL2A1P02458 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
COL2A1P02458 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
COL2A1P02458 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
COL2A1P02458 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
COL2A1P02458 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
COL2A1P02458 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
COL2A1P02458 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.45■■□□□ 1.03
COL2A1P02458 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.45■■□□□ 1.03
COL2A1P02458 RBM17P3-201ENST00000417687 1192 ntBASIC21.45■■□□□ 1.03
COL2A1P02458 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
COL2A1P02458 KRT18P67-201ENST00000432816 1264 ntBASIC21.45■■□□□ 1.03
COL2A1P02458 AC018712.1-201ENST00000455767 687 ntBASIC21.45■■□□□ 1.03
COL2A1P02458 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.03
COL2A1P02458 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.45■■□□□ 1.03
COL2A1P02458 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC21.45■■□□□ 1.03
COL2A1P02458 AC009533.2-201ENST00000543664 586 ntBASIC21.45■■□□□ 1.03
COL2A1P02458 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC21.45■■□□□ 1.03
COL2A1P02458 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC21.45■■□□□ 1.03
COL2A1P02458 AC008608.2-201ENST00000606089 416 ntBASIC21.45■■□□□ 1.03
COL2A1P02458 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.03
COL2A1P02458 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL2A1P02458 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL2A1P02458 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.45■■□□□ 1.02
COL2A1P02458 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL2A1P02458 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.45■■□□□ 1.02
COL2A1P02458 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL2A1P02458 AC125634.1-201ENST00000438758 1403 ntBASIC21.45■■□□□ 1.02
COL2A1P02458 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL2A1P02458 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
COL2A1P02458 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.45■■□□□ 1.02
COL2A1P02458 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
COL2A1P02458 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL2A1P02458 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC21.45■■□□□ 1.02
COL2A1P02458 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL2A1P02458 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC21.45■■□□□ 1.02
COL2A1P02458 AL773604.1-201ENST00000617417 272 ntBASIC21.45■■□□□ 1.02
COL2A1P02458 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL2A1P02458 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.44■■□□□ 1.02
COL2A1P02458 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC21.44■■□□□ 1.02
COL2A1P02458 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
COL2A1P02458 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms