Protein–RNA interactions for Protein: O95983

MBD3, Methyl-CpG-binding domain protein 3, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3O95983 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
MBD3O95983 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
MBD3O95983 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
MBD3O95983 PP12613-201ENST00000424958 2230 ntBASIC21.16■□□□□ 0.98
MBD3O95983 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.16■□□□□ 0.98
MBD3O95983 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.16■□□□□ 0.98
MBD3O95983 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
MBD3O95983 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC21.16■□□□□ 0.98
MBD3O95983 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.15■□□□□ 0.98
MBD3O95983 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 GMCL1P1-201ENST00000463439 1581 ntBASIC21.15■□□□□ 0.98
MBD3O95983 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
MBD3O95983 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
MBD3O95983 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.15■□□□□ 0.98
MBD3O95983 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.15■□□□□ 0.98
MBD3O95983 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.15■□□□□ 0.98
MBD3O95983 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.15■□□□□ 0.98
MBD3O95983 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
MBD3O95983 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.15■□□□□ 0.98
MBD3O95983 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 HARS-201ENST00000307633 1780 ntTSL 2 BASIC21.15■□□□□ 0.98
MBD3O95983 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC21.15■□□□□ 0.98
MBD3O95983 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
MBD3O95983 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC21.14■□□□□ 0.98
MBD3O95983 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC21.14■□□□□ 0.98
MBD3O95983 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.14■□□□□ 0.98
MBD3O95983 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.14■□□□□ 0.98
MBD3O95983 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.14■□□□□ 0.98
MBD3O95983 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.14■□□□□ 0.98
MBD3O95983 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
MBD3O95983 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
MBD3O95983 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
MBD3O95983 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC21.14■□□□□ 0.98
MBD3O95983 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
MBD3O95983 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3O95983 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3O95983 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.14■□□□□ 0.97
MBD3O95983 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.14■□□□□ 0.97
MBD3O95983 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3O95983 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
MBD3O95983 CDCA4P2-201ENST00000441182 718 ntBASIC21.14■□□□□ 0.97
MBD3O95983 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.14■□□□□ 0.97
MBD3O95983 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.14■□□□□ 0.97
MBD3O95983 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3O95983 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3O95983 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
MBD3O95983 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3O95983 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC21.14■□□□□ 0.97
MBD3O95983 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3O95983 AC141586.5-201ENST00000624546 2050 ntBASIC21.14■□□□□ 0.97
MBD3O95983 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
MBD3O95983 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.14■□□□□ 0.97
MBD3O95983 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
MBD3O95983 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.13■□□□□ 0.97
MBD3O95983 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
MBD3O95983 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.13■□□□□ 0.97
MBD3O95983 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
MBD3O95983 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MBD3O95983 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC21.13■□□□□ 0.97
MBD3O95983 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
MBD3O95983 AC124067.4-201ENST00000519691 2379 ntBASIC21.13■□□□□ 0.97
MBD3O95983 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MBD3O95983 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
MBD3O95983 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
MBD3O95983 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
MBD3O95983 PPP1R14BP2-201ENST00000426284 444 ntBASIC21.13■□□□□ 0.97
MBD3O95983 AC026185.1-201ENST00000445748 174 ntBASIC21.13■□□□□ 0.97
MBD3O95983 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.13■□□□□ 0.97
MBD3O95983 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
MBD3O95983 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.13■□□□□ 0.97
MBD3O95983 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms