Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
HDAC3O15379 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDAC3O15379 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.98■□□□□ 0.47
HDAC3O15379 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.98■□□□□ 0.47
HDAC3O15379 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.98■□□□□ 0.47
HDAC3O15379 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.98■□□□□ 0.47
HDAC3O15379 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.98■□□□□ 0.47
HDAC3O15379 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
HDAC3O15379 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.98■□□□□ 0.47
HDAC3O15379 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.98■□□□□ 0.47
HDAC3O15379 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
HDAC3O15379 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
HDAC3O15379 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC17.98■□□□□ 0.47
HDAC3O15379 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
HDAC3O15379 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.98■□□□□ 0.47
HDAC3O15379 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 AL096828.2-201ENST00000567259 1965 ntBASIC17.98■□□□□ 0.47
HDAC3O15379 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.98■□□□□ 0.47
HDAC3O15379 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.98■□□□□ 0.47
HDAC3O15379 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
HDAC3O15379 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HDAC3O15379 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HDAC3O15379 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.97■□□□□ 0.47
HDAC3O15379 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.97■□□□□ 0.47
HDAC3O15379 KRASP1-201ENST00000407852 552 ntBASIC17.97■□□□□ 0.47
HDAC3O15379 AC239809.2-201ENST00000415381 517 ntBASIC17.97■□□□□ 0.47
HDAC3O15379 NIFKP9-201ENST00000419265 221 ntBASIC17.97■□□□□ 0.47
HDAC3O15379 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.97■□□□□ 0.47
HDAC3O15379 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 AP003097.1-201ENST00000530657 1135 ntBASIC17.97■□□□□ 0.47
HDAC3O15379 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.97■□□□□ 0.47
HDAC3O15379 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.97■□□□□ 0.47
HDAC3O15379 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
HDAC3O15379 AL023875.1-201ENST00000640777 796 ntBASIC17.97■□□□□ 0.47
HDAC3O15379 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.97■□□□□ 0.47
HDAC3O15379 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HDAC3O15379 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.97■□□□□ 0.47
HDAC3O15379 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HDAC3O15379 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.97■□□□□ 0.47
HDAC3O15379 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HDAC3O15379 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
HDAC3O15379 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
HDAC3O15379 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 GMCL1P1-201ENST00000463439 1581 ntBASIC17.96■□□□□ 0.47
HDAC3O15379 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HDAC3O15379 AC012317.2-201ENST00000623305 2251 ntBASIC17.96■□□□□ 0.47
HDAC3O15379 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.96■□□□□ 0.47
HDAC3O15379 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
HDAC3O15379 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
HDAC3O15379 AP000593.1-201ENST00000393668 712 ntBASIC17.96■□□□□ 0.47
HDAC3O15379 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.96■□□□□ 0.47
HDAC3O15379 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.96■□□□□ 0.47
HDAC3O15379 MIR935-201ENST00000401179 91 ntBASIC17.96■□□□□ 0.47
HDAC3O15379 AC004951.3-201ENST00000418645 1148 ntBASIC17.96■□□□□ 0.47
HDAC3O15379 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.96■□□□□ 0.47
HDAC3O15379 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.96■□□□□ 0.47
HDAC3O15379 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.96■□□□□ 0.47
HDAC3O15379 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HDAC3O15379 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.96■□□□□ 0.47
HDAC3O15379 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HDAC3O15379 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HDAC3O15379 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.96■□□□□ 0.47
HDAC3O15379 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms