Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.24■□□□□ 0.99
DDX41Q9UJV9 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 SPDYE13P-201ENST00000445314 798 ntBASIC21.23■□□□□ 0.99
DDX41Q9UJV9 RASA4DP-201ENST00000460726 1199 ntBASIC21.23■□□□□ 0.99
DDX41Q9UJV9 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.23■□□□□ 0.99
DDX41Q9UJV9 AC024243.1-201ENST00000609234 778 ntBASIC21.23■□□□□ 0.99
DDX41Q9UJV9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
DDX41Q9UJV9 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX41Q9UJV9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 AC104581.1-202ENST00000635932 2618 ntBASIC21.21■□□□□ 0.99
DDX41Q9UJV9 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 HBZP1-201ENST00000354915 429 ntBASIC21.21■□□□□ 0.99
DDX41Q9UJV9 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 AC135050.7-201ENST00000624508 2218 ntBASIC21.21■□□□□ 0.99
DDX41Q9UJV9 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX41Q9UJV9 AC009113.1-201ENST00000570267 2443 ntBASIC21.2■□□□□ 0.99
DDX41Q9UJV9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
DDX41Q9UJV9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 AC120498.9-201ENST00000339021 3867 ntBASIC21.2■□□□□ 0.98
DDX41Q9UJV9 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 AC092597.1-201ENST00000487352 616 ntBASIC21.2■□□□□ 0.98
DDX41Q9UJV9 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.2■□□□□ 0.98
DDX41Q9UJV9 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms