Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC30.52■■■□□ 2.48
IFT140Q96RY7 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC30.52■■■□□ 2.48
IFT140Q96RY7 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC30.52■■■□□ 2.48
IFT140Q96RY7 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
IFT140Q96RY7 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
IFT140Q96RY7 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC30.52■■■□□ 2.48
IFT140Q96RY7 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC30.51■■■□□ 2.48
IFT140Q96RY7 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
IFT140Q96RY7 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC30.51■■■□□ 2.48
IFT140Q96RY7 MIR149-201ENST00000384879 89 ntBASIC30.51■■■□□ 2.48
IFT140Q96RY7 ATP6V0CP3-201ENST00000417255 467 ntBASIC30.51■■■□□ 2.48
IFT140Q96RY7 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC30.51■■■□□ 2.48
IFT140Q96RY7 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC30.51■■■□□ 2.48
IFT140Q96RY7 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC30.51■■■□□ 2.48
IFT140Q96RY7 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC30.51■■■□□ 2.48
IFT140Q96RY7 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC30.51■■■□□ 2.48
IFT140Q96RY7 GABARAPL3-202ENST00000624044 1851 ntBASIC30.51■■■□□ 2.48
IFT140Q96RY7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC30.51■■■□□ 2.48
IFT140Q96RY7 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
IFT140Q96RY7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
IFT140Q96RY7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
IFT140Q96RY7 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
IFT140Q96RY7 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
IFT140Q96RY7 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
IFT140Q96RY7 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
IFT140Q96RY7 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
IFT140Q96RY7 AP000867.4-201ENST00000641616 219 ntBASIC30.5■■■□□ 2.47
IFT140Q96RY7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC30.5■■■□□ 2.47
IFT140Q96RY7 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC30.5■■■□□ 2.47
IFT140Q96RY7 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC30.5■■■□□ 2.47
IFT140Q96RY7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
IFT140Q96RY7 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC30.5■■■□□ 2.47
IFT140Q96RY7 HLA-J-203ENST00000494367 1087 ntBASIC30.5■■■□□ 2.47
IFT140Q96RY7 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC30.5■■■□□ 2.47
IFT140Q96RY7 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
IFT140Q96RY7 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC30.5■■■□□ 2.47
IFT140Q96RY7 AC106028.4-201ENST00000614509 607 ntBASIC30.5■■■□□ 2.47
IFT140Q96RY7 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
IFT140Q96RY7 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC30.49■■■□□ 2.47
IFT140Q96RY7 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC30.49■■■□□ 2.47
IFT140Q96RY7 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC30.49■■■□□ 2.47
IFT140Q96RY7 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
IFT140Q96RY7 IRX1P1-201ENST00000438849 1838 ntBASIC30.49■■■□□ 2.47
IFT140Q96RY7 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC30.49■■■□□ 2.47
IFT140Q96RY7 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
IFT140Q96RY7 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
IFT140Q96RY7 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
IFT140Q96RY7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC30.49■■■□□ 2.47
IFT140Q96RY7 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
IFT140Q96RY7 C20orf181-201ENST00000623918 480 ntBASIC30.49■■■□□ 2.47
IFT140Q96RY7 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
IFT140Q96RY7 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
IFT140Q96RY7 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
IFT140Q96RY7 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
IFT140Q96RY7 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
IFT140Q96RY7 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
IFT140Q96RY7 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
IFT140Q96RY7 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
IFT140Q96RY7 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 MKNK2P1-201ENST00000437526 628 ntBASIC30.48■■■□□ 2.47
IFT140Q96RY7 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 PRR29-209ENST00000582540 967 ntTSL 2 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 MIR1199-201ENST00000621445 119 ntBASIC30.48■■■□□ 2.47
IFT140Q96RY7 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 PGM5P2-202ENST00000637225 1043 ntBASIC30.48■■■□□ 2.47
IFT140Q96RY7 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
IFT140Q96RY7 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
IFT140Q96RY7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
IFT140Q96RY7 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC30.48■■■□□ 2.47
IFT140Q96RY7 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC30.47■■■□□ 2.47
IFT140Q96RY7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
IFT140Q96RY7 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
IFT140Q96RY7 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
IFT140Q96RY7 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
IFT140Q96RY7 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
IFT140Q96RY7 BCRP1-201ENST00000444246 691 ntBASIC30.47■■■□□ 2.47
IFT140Q96RY7 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC30.47■■■□□ 2.47
IFT140Q96RY7 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC30.47■■■□□ 2.47
IFT140Q96RY7 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
IFT140Q96RY7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
IFT140Q96RY7 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
IFT140Q96RY7 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC30.47■■■□□ 2.47
IFT140Q96RY7 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC30.47■■■□□ 2.47
IFT140Q96RY7 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC30.46■■■□□ 2.47
IFT140Q96RY7 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
IFT140Q96RY7 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC30.46■■■□□ 2.47
IFT140Q96RY7 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
IFT140Q96RY7 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
IFT140Q96RY7 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC30.46■■■□□ 2.47
IFT140Q96RY7 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC30.46■■■□□ 2.47
IFT140Q96RY7 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC30.46■■■□□ 2.47
IFT140Q96RY7 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms