Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 PRSS44-201ENST00000515154 1146 ntBASIC20.97■□□□□ 0.95
ERCC4Q92889 AC011298.2-201ENST00000617989 482 ntBASIC20.97■□□□□ 0.95
ERCC4Q92889 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
ERCC4Q92889 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ERCC4Q92889 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
ERCC4Q92889 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ERCC4Q92889 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.97■□□□□ 0.95
ERCC4Q92889 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ERCC4Q92889 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ERCC4Q92889 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.97■□□□□ 0.95
ERCC4Q92889 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ERCC4Q92889 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
ERCC4Q92889 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
ERCC4Q92889 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
ERCC4Q92889 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.96■□□□□ 0.95
ERCC4Q92889 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
ERCC4Q92889 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.96■□□□□ 0.95
ERCC4Q92889 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.96■□□□□ 0.95
ERCC4Q92889 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.96■□□□□ 0.95
ERCC4Q92889 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.96■□□□□ 0.95
ERCC4Q92889 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
ERCC4Q92889 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
ERCC4Q92889 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ERCC4Q92889 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
ERCC4Q92889 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC20.95■□□□□ 0.95
ERCC4Q92889 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC20.95■□□□□ 0.94
ERCC4Q92889 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.95■□□□□ 0.94
ERCC4Q92889 KSR1P1-201ENST00000446298 240 ntBASIC20.95■□□□□ 0.94
ERCC4Q92889 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.95■□□□□ 0.94
ERCC4Q92889 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.95■□□□□ 0.94
ERCC4Q92889 RPPH1-201ENST00000516869 333 ntBASIC20.95■□□□□ 0.94
ERCC4Q92889 CD99P1-205ENST00000527459 561 ntBASIC20.95■□□□□ 0.94
ERCC4Q92889 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.95■□□□□ 0.94
ERCC4Q92889 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.95■□□□□ 0.94
ERCC4Q92889 AL353708.3-201ENST00000610272 989 ntBASIC20.95■□□□□ 0.94
ERCC4Q92889 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
ERCC4Q92889 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.95■□□□□ 0.94
ERCC4Q92889 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
ERCC4Q92889 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
ERCC4Q92889 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.95■□□□□ 0.94
ERCC4Q92889 AC008556.1-201ENST00000610908 2040 ntBASIC20.95■□□□□ 0.94
ERCC4Q92889 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
ERCC4Q92889 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
ERCC4Q92889 KRT16P1-201ENST00000399124 1418 ntBASIC20.95■□□□□ 0.94
ERCC4Q92889 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ERCC4Q92889 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.94■□□□□ 0.94
ERCC4Q92889 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
ERCC4Q92889 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.94■□□□□ 0.94
ERCC4Q92889 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
ERCC4Q92889 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
ERCC4Q92889 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.94■□□□□ 0.94
ERCC4Q92889 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.94■□□□□ 0.94
ERCC4Q92889 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.94■□□□□ 0.94
ERCC4Q92889 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
ERCC4Q92889 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.94■□□□□ 0.94
ERCC4Q92889 AC008622.2-201ENST00000617006 1229 ntBASIC20.94■□□□□ 0.94
ERCC4Q92889 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 AC093677.2-201ENST00000600169 1863 ntBASIC20.94■□□□□ 0.94
ERCC4Q92889 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.94■□□□□ 0.94
ERCC4Q92889 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
ERCC4Q92889 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC20.94■□□□□ 0.94
ERCC4Q92889 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ERCC4Q92889 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms