Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 KRT18P41-201ENST00000518924 1277 ntBASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 AC009065.1-201ENST00000564055 1225 ntBASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC24.33■■□□□ 1.48
USHBP1Q8N6Y0 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 NARF-204ENST00000390006 1766 ntTSL 2 BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 MOK-208ENST00000519058 917 ntTSL 2 BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 AC120114.3-201ENST00000611923 658 ntBASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 AC023511.2-201ENST00000618803 211 ntBASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
USHBP1Q8N6Y0 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 SNAI3-AS1-205ENST00000568633 2096 ntBASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 RNA5SP419-201ENST00000515908 135 ntBASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 AL662844.1-201ENST00000546340 181 ntBASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USHBP1Q8N6Y0 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 AC096582.2-201ENST00000510860 516 ntBASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 AL499627.1-201ENST00000569373 2188 ntBASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
USHBP1Q8N6Y0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 AC148477.8-201ENST00000624298 468 ntBASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USHBP1Q8N6Y0 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USHBP1Q8N6Y0 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms