Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 AC005837.3-201ENST00000612163 286 ntBASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CCDC28AQ8IWP9 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC28AQ8IWP9 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
CCDC28AQ8IWP9 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC15.46■□□□□ 0.06
CCDC28AQ8IWP9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
CCDC28AQ8IWP9 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.46■□□□□ 0.06
CCDC28AQ8IWP9 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC15.46■□□□□ 0.06
CCDC28AQ8IWP9 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.46■□□□□ 0.06
CCDC28AQ8IWP9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC15.46■□□□□ 0.06
CCDC28AQ8IWP9 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC15.46■□□□□ 0.06
CCDC28AQ8IWP9 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
CCDC28AQ8IWP9 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 MPST-204ENST00000404393 1329 ntTSL 5 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 AC009237.14-201ENST00000609975 1594 ntBASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 HYI-206ENST00000372434 1025 ntTSL 5 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 RARRES2P11-201ENST00000635158 484 ntBASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 MOK-225ENST00000522867 1883 ntTSL 5 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
CCDC28AQ8IWP9 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 PP12613-201ENST00000424958 2230 ntBASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 GOLGA2P11-201ENST00000562660 1621 ntBASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 SUDS3P1-201ENST00000505831 966 ntBASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 AL354811.1-201ENST00000610286 706 ntBASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CCDC28AQ8IWP9 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms