Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 SDHAP2-201ENST00000455183 2001 ntBASIC18.07■□□□□ 0.48
VRK3Q8IV63 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.07■□□□□ 0.48
VRK3Q8IV63 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 AC140113.3-201ENST00000605663 199 ntBASIC18.07■□□□□ 0.48
VRK3Q8IV63 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.07■□□□□ 0.48
VRK3Q8IV63 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
VRK3Q8IV63 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 AP000523.1-201ENST00000398242 1049 ntBASIC18.06■□□□□ 0.48
VRK3Q8IV63 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 AL157888.1-201ENST00000631930 593 ntBASIC18.06■□□□□ 0.48
VRK3Q8IV63 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.06■□□□□ 0.48
VRK3Q8IV63 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
VRK3Q8IV63 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VRK3Q8IV63 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VRK3Q8IV63 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VRK3Q8IV63 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VRK3Q8IV63 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
VRK3Q8IV63 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VRK3Q8IV63 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VRK3Q8IV63 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
VRK3Q8IV63 TMPOP1-202ENST00000424642 1267 ntBASIC18.05■□□□□ 0.48
VRK3Q8IV63 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 MIR3917-201ENST00000580971 93 ntBASIC18.05■□□□□ 0.48
VRK3Q8IV63 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VRK3Q8IV63 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
VRK3Q8IV63 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.05■□□□□ 0.48
VRK3Q8IV63 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
VRK3Q8IV63 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.04■□□□□ 0.48
VRK3Q8IV63 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms