Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SH3RF1Q7Z6J0 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 AP002383.4-201ENST00000442518 975 ntBASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 TSSC2-201ENST00000450217 709 ntBASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 AC004263.2-201ENST00000617183 678 ntBASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SH3RF1Q7Z6J0 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 FAAHP1-202ENST00000446499 1238 ntBASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.15■□□□□ 0.98
SH3RF1Q7Z6J0 AC135050.7-201ENST00000624508 2218 ntBASIC21.14■□□□□ 0.98
SH3RF1Q7Z6J0 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SH3RF1Q7Z6J0 KRT8P32-201ENST00000512863 1461 ntBASIC21.14■□□□□ 0.98
SH3RF1Q7Z6J0 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.14■□□□□ 0.98
SH3RF1Q7Z6J0 KRT8P3-201ENST00000519669 1449 ntBASIC21.14■□□□□ 0.98
SH3RF1Q7Z6J0 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SH3RF1Q7Z6J0 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SH3RF1Q7Z6J0 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
SH3RF1Q7Z6J0 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SH3RF1Q7Z6J0 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.14■□□□□ 0.97
SH3RF1Q7Z6J0 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SH3RF1Q7Z6J0 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SH3RF1Q7Z6J0 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.14■□□□□ 0.97
SH3RF1Q7Z6J0 BICD1-207ENST00000551848 1962 ntBASIC21.14■□□□□ 0.97
SH3RF1Q7Z6J0 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 MCC-208ENST00000514701 2855 ntTSL 2 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SH3RF1Q7Z6J0 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SH3RF1Q7Z6J0 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms