Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC11.41□□□□□ -0.58
HSPG2P98160 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC11.41□□□□□ -0.58
HSPG2P98160 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
HSPG2P98160 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
HSPG2P98160 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC11.41□□□□□ -0.58
HSPG2P98160 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC11.4□□□□□ -0.58
HSPG2P98160 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC11.4□□□□□ -0.58
HSPG2P98160 MIR661-201ENST00000384842 89 ntBASIC11.4□□□□□ -0.58
HSPG2P98160 HCG4B-203ENST00000450128 991 ntBASIC11.4□□□□□ -0.58
HSPG2P98160 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HSPG2P98160 AC068472.1-201ENST00000474589 881 ntBASIC11.4□□□□□ -0.58
HSPG2P98160 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC11.4□□□□□ -0.58
HSPG2P98160 AL008721.1-201ENST00000609964 604 ntBASIC11.4□□□□□ -0.58
HSPG2P98160 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
HSPG2P98160 KATNBL1P6-202ENST00000562413 1466 ntBASIC11.4□□□□□ -0.58
HSPG2P98160 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC11.4□□□□□ -0.58
HSPG2P98160 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HSPG2P98160 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HSPG2P98160 NMU-203ENST00000507338 658 ntTSL 3 BASIC11.4□□□□□ -0.58
HSPG2P98160 DUX4L17-201ENST00000557360 1267 ntBASIC11.4□□□□□ -0.58
HSPG2P98160 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
HSPG2P98160 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC11.4□□□□□ -0.58
HSPG2P98160 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC11.4□□□□□ -0.58
HSPG2P98160 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC11.4□□□□□ -0.58
HSPG2P98160 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC11.4□□□□□ -0.58
HSPG2P98160 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC11.4□□□□□ -0.58
HSPG2P98160 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HSPG2P98160 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC11.4□□□□□ -0.58
HSPG2P98160 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HSPG2P98160 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
HSPG2P98160 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
HSPG2P98160 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
HSPG2P98160 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC11.4□□□□□ -0.58
HSPG2P98160 RNF151-202ENST00000569210 853 ntTSL 2 BASIC11.4□□□□□ -0.58
HSPG2P98160 LSM12-202ENST00000585388 942 ntTSL 3 BASIC11.4□□□□□ -0.58
HSPG2P98160 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC11.4□□□□□ -0.58
HSPG2P98160 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC11.4□□□□□ -0.58
HSPG2P98160 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC11.4□□□□□ -0.59
HSPG2P98160 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
HSPG2P98160 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
HSPG2P98160 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC11.4□□□□□ -0.59
HSPG2P98160 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.59
HSPG2P98160 VN2R19P-201ENST00000442399 1052 ntBASIC11.39□□□□□ -0.59
HSPG2P98160 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC11.39□□□□□ -0.59
HSPG2P98160 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC11.39□□□□□ -0.59
HSPG2P98160 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC11.39□□□□□ -0.59
HSPG2P98160 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC11.39□□□□□ -0.59
HSPG2P98160 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC11.39□□□□□ -0.59
HSPG2P98160 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 ABCD1P5-201ENST00000445663 754 ntBASIC11.39□□□□□ -0.59
HSPG2P98160 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC11.39□□□□□ -0.59
HSPG2P98160 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 C20orf181-201ENST00000623918 480 ntBASIC11.39□□□□□ -0.59
HSPG2P98160 AF228730.6-201ENST00000641497 218 ntBASIC11.39□□□□□ -0.59
HSPG2P98160 AC084121.3-201ENST00000641716 218 ntBASIC11.39□□□□□ -0.59
HSPG2P98160 AC105233.6-201ENST00000642093 218 ntBASIC11.39□□□□□ -0.59
HSPG2P98160 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC11.39□□□□□ -0.59
HSPG2P98160 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC11.39□□□□□ -0.59
HSPG2P98160 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC11.39□□□□□ -0.59
HSPG2P98160 NARF-204ENST00000390006 1766 ntTSL 2 BASIC11.39□□□□□ -0.59
HSPG2P98160 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC11.39□□□□□ -0.59
HSPG2P98160 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 TEX21P-204ENST00000641479 1693 ntBASIC11.39□□□□□ -0.59
HSPG2P98160 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 TSEN15P1-201ENST00000423257 515 ntBASIC11.39□□□□□ -0.59
HSPG2P98160 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC11.39□□□□□ -0.59
HSPG2P98160 AC069262.1-201ENST00000539058 672 ntBASIC11.39□□□□□ -0.59
HSPG2P98160 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
HSPG2P98160 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC11.38□□□□□ -0.59
HSPG2P98160 AC002472.2-201ENST00000442739 958 ntBASIC11.38□□□□□ -0.59
HSPG2P98160 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC11.38□□□□□ -0.59
HSPG2P98160 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC11.38□□□□□ -0.59
HSPG2P98160 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC11.38□□□□□ -0.59
HSPG2P98160 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 GOLGA2P11-201ENST00000562660 1621 ntBASIC11.38□□□□□ -0.59
HSPG2P98160 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC11.38□□□□□ -0.59
HSPG2P98160 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
HSPG2P98160 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms