Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 GPR32P1-201ENST00000601788 811 ntBASIC18.25■□□□□ 0.51
LIMK1P53667 AL139424.1-201ENST00000607572 797 ntBASIC18.25■□□□□ 0.51
LIMK1P53667 AL592071.1-201ENST00000611956 408 ntBASIC18.25■□□□□ 0.51
LIMK1P53667 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMK1P53667 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.25■□□□□ 0.51
LIMK1P53667 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMK1P53667 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
LIMK1P53667 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMK1P53667 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMK1P53667 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.24■□□□□ 0.51
LIMK1P53667 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
LIMK1P53667 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
LIMK1P53667 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LIMK1P53667 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.24■□□□□ 0.51
LIMK1P53667 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.24■□□□□ 0.51
LIMK1P53667 RN7SL606P-201ENST00000472779 293 ntBASIC18.24■□□□□ 0.51
LIMK1P53667 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMK1P53667 AC139887.3-201ENST00000568585 713 ntBASIC18.24■□□□□ 0.51
LIMK1P53667 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.24■□□□□ 0.51
LIMK1P53667 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.24■□□□□ 0.51
LIMK1P53667 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.24■□□□□ 0.51
LIMK1P53667 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMK1P53667 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMK1P53667 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
LIMK1P53667 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.23■□□□□ 0.51
LIMK1P53667 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.23■□□□□ 0.51
LIMK1P53667 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.23■□□□□ 0.51
LIMK1P53667 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.23■□□□□ 0.51
LIMK1P53667 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.23■□□□□ 0.51
LIMK1P53667 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.23■□□□□ 0.51
LIMK1P53667 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.23■□□□□ 0.51
LIMK1P53667 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.23■□□□□ 0.51
LIMK1P53667 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LIMK1P53667 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMK1P53667 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.22■□□□□ 0.51
LIMK1P53667 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
LIMK1P53667 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
LIMK1P53667 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
LIMK1P53667 KRT18P23-201ENST00000435622 1283 ntBASIC18.22■□□□□ 0.51
LIMK1P53667 AC018712.1-201ENST00000455767 687 ntBASIC18.22■□□□□ 0.51
LIMK1P53667 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.22■□□□□ 0.51
LIMK1P53667 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.22■□□□□ 0.51
LIMK1P53667 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.22■□□□□ 0.51
LIMK1P53667 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.22■□□□□ 0.51
LIMK1P53667 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.22■□□□□ 0.51
LIMK1P53667 LETM1P2-201ENST00000597330 2178 ntBASIC18.22■□□□□ 0.51
LIMK1P53667 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.22■□□□□ 0.51
LIMK1P53667 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.22■□□□□ 0.51
LIMK1P53667 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.22■□□□□ 0.51
LIMK1P53667 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LIMK1P53667 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LIMK1P53667 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms