Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.21■□□□□ 0.67
PTPN9P43378 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN9P43378 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.2■□□□□ 0.66
PTPN9P43378 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.2■□□□□ 0.66
PTPN9P43378 BX664615.1-201ENST00000443558 458 ntBASIC19.2■□□□□ 0.66
PTPN9P43378 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.2■□□□□ 0.66
PTPN9P43378 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.2■□□□□ 0.66
PTPN9P43378 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
PTPN9P43378 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.2■□□□□ 0.66
PTPN9P43378 GCSHP2-201ENST00000560971 527 ntBASIC19.2■□□□□ 0.66
PTPN9P43378 AL023973.1-201ENST00000624619 620 ntBASIC19.2■□□□□ 0.66
PTPN9P43378 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
PTPN9P43378 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
PTPN9P43378 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
PTPN9P43378 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN9P43378 NEFHP1-201ENST00000412845 2629 ntBASIC19.2■□□□□ 0.66
PTPN9P43378 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC19.2■□□□□ 0.66
PTPN9P43378 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.2■□□□□ 0.66
PTPN9P43378 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN9P43378 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN9P43378 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN9P43378 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
PTPN9P43378 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN9P43378 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.19■□□□□ 0.66
PTPN9P43378 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN9P43378 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
PTPN9P43378 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
PTPN9P43378 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.19■□□□□ 0.66
PTPN9P43378 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
PTPN9P43378 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN9P43378 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN9P43378 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.19■□□□□ 0.66
PTPN9P43378 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.19■□□□□ 0.66
PTPN9P43378 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN9P43378 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN9P43378 GMCL1P1-201ENST00000463439 1581 ntBASIC19.19■□□□□ 0.66
PTPN9P43378 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN9P43378 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
PTPN9P43378 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PTPN9P43378 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PTPN9P43378 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.18■□□□□ 0.66
PTPN9P43378 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.18■□□□□ 0.66
PTPN9P43378 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN9P43378 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.18■□□□□ 0.66
PTPN9P43378 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PTPN9P43378 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PTPN9P43378 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.18■□□□□ 0.66
PTPN9P43378 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
PTPN9P43378 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.18■□□□□ 0.66
PTPN9P43378 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN9P43378 AL354751.1-201ENST00000412768 1863 ntBASIC19.18■□□□□ 0.66
PTPN9P43378 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
PTPN9P43378 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
PTPN9P43378 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN9P43378 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PTPN9P43378 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PTPN9P43378 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PTPN9P43378 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN9P43378 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
PTPN9P43378 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
PTPN9P43378 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN9P43378 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN9P43378 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.17■□□□□ 0.66
PTPN9P43378 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms