Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CIITAP33076 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
CIITAP33076 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.77■□□□□ 0.92
CIITAP33076 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.77■□□□□ 0.92
CIITAP33076 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.77■□□□□ 0.92
CIITAP33076 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CIITAP33076 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CIITAP33076 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CIITAP33076 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CIITAP33076 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.77■□□□□ 0.92
CIITAP33076 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CIITAP33076 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.77■□□□□ 0.92
CIITAP33076 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
CIITAP33076 WIZP1-201ENST00000531444 2299 ntBASIC20.77■□□□□ 0.92
CIITAP33076 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CIITAP33076 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CIITAP33076 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.77■□□□□ 0.91
CIITAP33076 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CIITAP33076 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CIITAP33076 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CIITAP33076 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.77■□□□□ 0.91
CIITAP33076 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CIITAP33076 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 IER3-202ENST00000376377 1350 ntBASIC20.76■□□□□ 0.91
CIITAP33076 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.76■□□□□ 0.91
CIITAP33076 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.76■□□□□ 0.91
CIITAP33076 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.76■□□□□ 0.91
CIITAP33076 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.76■□□□□ 0.91
CIITAP33076 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.76■□□□□ 0.91
CIITAP33076 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC20.76■□□□□ 0.91
CIITAP33076 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.76■□□□□ 0.91
CIITAP33076 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.76■□□□□ 0.91
CIITAP33076 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.76■□□□□ 0.91
CIITAP33076 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.76■□□□□ 0.91
CIITAP33076 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.76■□□□□ 0.91
CIITAP33076 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.76■□□□□ 0.91
CIITAP33076 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CIITAP33076 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CIITAP33076 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CIITAP33076 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.76■□□□□ 0.91
CIITAP33076 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
CIITAP33076 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.76■□□□□ 0.91
CIITAP33076 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CIITAP33076 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.75■□□□□ 0.91
CIITAP33076 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.75■□□□□ 0.91
CIITAP33076 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.75■□□□□ 0.91
CIITAP33076 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CIITAP33076 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 RNF126P1-202ENST00000569893 925 ntBASIC20.75■□□□□ 0.91
CIITAP33076 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.75■□□□□ 0.91
CIITAP33076 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.75■□□□□ 0.91
CIITAP33076 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CIITAP33076 AC004408.2-201ENST00000623613 2777 ntBASIC20.75■□□□□ 0.91
CIITAP33076 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.75■□□□□ 0.91
CIITAP33076 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.75■□□□□ 0.91
CIITAP33076 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CIITAP33076 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.75■□□□□ 0.91
CIITAP33076 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CIITAP33076 AC099343.3-201ENST00000605834 2503 ntBASIC20.74■□□□□ 0.91
CIITAP33076 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.74■□□□□ 0.91
CIITAP33076 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC20.74■□□□□ 0.91
CIITAP33076 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.74■□□□□ 0.91
CIITAP33076 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CIITAP33076 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CIITAP33076 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.74■□□□□ 0.91
CIITAP33076 KRT18P48-201ENST00000434763 852 ntBASIC20.74■□□□□ 0.91
CIITAP33076 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
CIITAP33076 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.74■□□□□ 0.91
CIITAP33076 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.74■□□□□ 0.91
CIITAP33076 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.74■□□□□ 0.91
CIITAP33076 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.74■□□□□ 0.91
CIITAP33076 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.74■□□□□ 0.91
CIITAP33076 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms