Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.87■□□□□ 0.45
LDLRP01130 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.87■□□□□ 0.45
LDLRP01130 WWOX-216ENST00000569818 525 ntBASIC17.87■□□□□ 0.45
LDLRP01130 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
LDLRP01130 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
LDLRP01130 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
LDLRP01130 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.87■□□□□ 0.45
LDLRP01130 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.87■□□□□ 0.45
LDLRP01130 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.87■□□□□ 0.45
LDLRP01130 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.87■□□□□ 0.45
LDLRP01130 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.87■□□□□ 0.45
LDLRP01130 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LDLRP01130 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.86■□□□□ 0.45
LDLRP01130 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.86■□□□□ 0.45
LDLRP01130 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC17.86■□□□□ 0.45
LDLRP01130 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
LDLRP01130 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.86■□□□□ 0.45
LDLRP01130 AP002982.1-201ENST00000492365 877 ntBASIC17.86■□□□□ 0.45
LDLRP01130 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.86■□□□□ 0.45
LDLRP01130 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.86■□□□□ 0.45
LDLRP01130 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.86■□□□□ 0.45
LDLRP01130 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.86■□□□□ 0.45
LDLRP01130 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
LDLRP01130 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.86■□□□□ 0.45
LDLRP01130 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.86■□□□□ 0.45
LDLRP01130 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.86■□□□□ 0.45
LDLRP01130 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.86■□□□□ 0.45
LDLRP01130 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.86■□□□□ 0.45
LDLRP01130 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LDLRP01130 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
LDLRP01130 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.86■□□□□ 0.45
LDLRP01130 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.85■□□□□ 0.45
LDLRP01130 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
LDLRP01130 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.85■□□□□ 0.45
LDLRP01130 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.85■□□□□ 0.45
LDLRP01130 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.85■□□□□ 0.45
LDLRP01130 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC17.85■□□□□ 0.45
LDLRP01130 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.85■□□□□ 0.45
LDLRP01130 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.85■□□□□ 0.45
LDLRP01130 AC083906.6-201ENST00000641366 219 ntBASIC17.85■□□□□ 0.45
LDLRP01130 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.85■□□□□ 0.45
LDLRP01130 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
LDLRP01130 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LDLRP01130 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.84■□□□□ 0.45
LDLRP01130 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.84■□□□□ 0.45
LDLRP01130 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LDLRP01130 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LDLRP01130 FEM1AP3-201ENST00000403722 1741 ntBASIC17.84■□□□□ 0.45
LDLRP01130 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.84■□□□□ 0.45
LDLRP01130 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
LDLRP01130 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LDLRP01130 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms