Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.41■■□□□ 1.02
CTDNEP1O95476 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CTDNEP1O95476 LINC01126-201ENST00000623515 1646 ntBASIC21.41■■□□□ 1.02
CTDNEP1O95476 AC009102.3-201ENST00000623118 1491 ntBASIC21.41■■□□□ 1.02
CTDNEP1O95476 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CTDNEP1O95476 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.41■■□□□ 1.02
CTDNEP1O95476 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CTDNEP1O95476 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.41■■□□□ 1.02
CTDNEP1O95476 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
CTDNEP1O95476 MIR149-201ENST00000384879 89 ntBASIC21.41■■□□□ 1.02
CTDNEP1O95476 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CTDNEP1O95476 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CTDNEP1O95476 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.41■■□□□ 1.02
CTDNEP1O95476 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC21.41■■□□□ 1.02
CTDNEP1O95476 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CTDNEP1O95476 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CTDNEP1O95476 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.41■■□□□ 1.02
CTDNEP1O95476 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
CTDNEP1O95476 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CTDNEP1O95476 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTDNEP1O95476 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CTDNEP1O95476 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTDNEP1O95476 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTDNEP1O95476 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CTDNEP1O95476 HMGA1P5-201ENST00000412453 271 ntBASIC21.4■■□□□ 1.02
CTDNEP1O95476 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CTDNEP1O95476 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTDNEP1O95476 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTDNEP1O95476 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTDNEP1O95476 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CTDNEP1O95476 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 GMCL1P1-201ENST00000463439 1581 ntBASIC21.4■■□□□ 1.02
CTDNEP1O95476 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
CTDNEP1O95476 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTDNEP1O95476 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTDNEP1O95476 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC21.39■■□□□ 1.02
CTDNEP1O95476 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTDNEP1O95476 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTDNEP1O95476 AL096828.2-201ENST00000567259 1965 ntBASIC21.39■■□□□ 1.02
CTDNEP1O95476 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
CTDNEP1O95476 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTDNEP1O95476 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTDNEP1O95476 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CTDNEP1O95476 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CTDNEP1O95476 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.39■■□□□ 1.02
CTDNEP1O95476 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTDNEP1O95476 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.39■■□□□ 1.01
CTDNEP1O95476 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTDNEP1O95476 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 AC145285.6-201ENST00000604632 637 ntBASIC21.39■■□□□ 1.01
CTDNEP1O95476 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTDNEP1O95476 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CTDNEP1O95476 AC008764.6-201ENST00000595909 2069 ntBASIC21.39■■□□□ 1.01
CTDNEP1O95476 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.39■■□□□ 1.01
CTDNEP1O95476 AC005332.8-201ENST00000622750 2735 ntBASIC21.39■■□□□ 1.01
CTDNEP1O95476 AC067852.2-201ENST00000590513 2313 ntBASIC21.39■■□□□ 1.01
CTDNEP1O95476 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CTDNEP1O95476 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CTDNEP1O95476 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTDNEP1O95476 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTDNEP1O95476 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CTDNEP1O95476 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 GXYLT1P3-201ENST00000453058 1193 ntBASIC21.38■■□□□ 1.01
CTDNEP1O95476 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.38■■□□□ 1.01
CTDNEP1O95476 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CTDNEP1O95476 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms