Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.08■□□□□ 0.49
SIX3O95343 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SIX3O95343 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SIX3O95343 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.08■□□□□ 0.49
SIX3O95343 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SIX3O95343 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.08■□□□□ 0.49
SIX3O95343 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
SIX3O95343 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.08■□□□□ 0.49
SIX3O95343 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.08■□□□□ 0.48
SIX3O95343 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SIX3O95343 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SIX3O95343 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SIX3O95343 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.08■□□□□ 0.48
SIX3O95343 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.08■□□□□ 0.48
SIX3O95343 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.08■□□□□ 0.48
SIX3O95343 MIR4674-201ENST00000582457 87 ntBASIC18.08■□□□□ 0.48
SIX3O95343 Z99916.2-201ENST00000604037 246 ntBASIC18.08■□□□□ 0.48
SIX3O95343 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.08■□□□□ 0.48
SIX3O95343 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SIX3O95343 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SIX3O95343 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SIX3O95343 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SIX3O95343 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SIX3O95343 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.08■□□□□ 0.48
SIX3O95343 AC138932.1-201ENST00000534164 6830 ntBASIC18.08■□□□□ 0.48
SIX3O95343 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SIX3O95343 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
SIX3O95343 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.07■□□□□ 0.48
SIX3O95343 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX3O95343 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX3O95343 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SIX3O95343 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.07■□□□□ 0.48
SIX3O95343 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX3O95343 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
SIX3O95343 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.07■□□□□ 0.48
SIX3O95343 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.07■□□□□ 0.48
SIX3O95343 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.07■□□□□ 0.48
SIX3O95343 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.07■□□□□ 0.48
SIX3O95343 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX3O95343 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX3O95343 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX3O95343 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.07■□□□□ 0.48
SIX3O95343 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SIX3O95343 AC008764.6-201ENST00000595909 2069 ntBASIC18.07■□□□□ 0.48
SIX3O95343 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.06■□□□□ 0.48
SIX3O95343 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.06■□□□□ 0.48
SIX3O95343 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX3O95343 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SIX3O95343 AL355355.2-201ENST00000442321 338 ntBASIC18.06■□□□□ 0.48
SIX3O95343 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX3O95343 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX3O95343 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.06■□□□□ 0.48
SIX3O95343 REXO1L9P-201ENST00000604264 2108 ntBASIC18.06■□□□□ 0.48
SIX3O95343 AP001412.1-201ENST00000608405 714 ntBASIC18.06■□□□□ 0.48
SIX3O95343 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.06■□□□□ 0.48
SIX3O95343 AC026471.5-201ENST00000615068 467 ntBASIC18.06■□□□□ 0.48
SIX3O95343 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.06■□□□□ 0.48
SIX3O95343 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SIX3O95343 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
SIX3O95343 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 KRT8P50-201ENST00000562022 1438 ntBASIC18.06■□□□□ 0.48
SIX3O95343 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
SIX3O95343 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.06■□□□□ 0.48
SIX3O95343 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SIX3O95343 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SIX3O95343 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
SIX3O95343 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SIX3O95343 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms