Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A6A6NMZ7 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 AC027612.4-201ENST00000605371 583 ntBASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 AC106028.4-201ENST00000614509 607 ntBASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 AC093512.1-201ENST00000617969 520 ntBASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
COL6A6A6NMZ7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 AC190387.1-201ENST00000551683 408 ntBASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 AC025062.2-201ENST00000605477 670 ntBASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC16.58■□□□□ 0.25
COL6A6A6NMZ7 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 INTS4P1-201ENST00000438455 1935 ntBASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 AC112907.3-201ENST00000577781 2400 ntBASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 RCN1P2-201ENST00000398357 915 ntBASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 AP002472.1-201ENST00000577490 586 ntBASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 AC138761.1-201ENST00000584393 385 ntBASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 AL138831.2-201ENST00000606564 490 ntBASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
COL6A6A6NMZ7 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 AC112777.1-201ENST00000540175 1423 ntBASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A6A6NMZ7 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms