Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88CQ9P219 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88CQ9P219 MTMR9LP-203ENST00000426597 1545 ntBASIC17.67■□□□□ 0.42
CCDC88CQ9P219 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
CCDC88CQ9P219 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88CQ9P219 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88CQ9P219 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC88CQ9P219 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 DUSP5P1-201ENST00000441325 1139 ntBASIC17.66■□□□□ 0.42
CCDC88CQ9P219 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC88CQ9P219 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 SPDYE13P-201ENST00000445314 798 ntBASIC17.65■□□□□ 0.42
CCDC88CQ9P219 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 AL121956.5-201ENST00000625261 221 ntBASIC17.65■□□□□ 0.42
CCDC88CQ9P219 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 AC093525.10-201ENST00000625130 1569 ntBASIC17.65■□□□□ 0.42
CCDC88CQ9P219 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 HCG4P8-203ENST00000443049 980 ntBASIC17.65■□□□□ 0.42
CCDC88CQ9P219 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88CQ9P219 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC88CQ9P219 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 HLA-F-220ENST00000434407 884 ntBASIC17.64■□□□□ 0.41
CCDC88CQ9P219 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 AC140113.3-201ENST00000605663 199 ntBASIC17.64■□□□□ 0.41
CCDC88CQ9P219 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC88CQ9P219 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88CQ9P219 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88CQ9P219 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms