Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 HLA-A-201ENST00000376802 1334 ntBASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 REXO1L6P-202ENST00000619970 1078 ntBASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC24.38■■□□□ 1.49
USHBP1Q8N6Y0 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 UROS-202ENST00000368778 1556 ntTSL 2 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 BNIP3P18-201ENST00000593976 575 ntBASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC24.37■■□□□ 1.49
USHBP1Q8N6Y0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 SAPCD2P3-201ENST00000455031 850 ntBASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 MINOS1P3-201ENST00000457048 203 ntBASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 KRT89P-201ENST00000620027 1478 ntBASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
USHBP1Q8N6Y0 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 AC011840.4-201ENST00000578471 627 ntBASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
USHBP1Q8N6Y0 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 VENTXP7-201ENST00000475503 772 ntBASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 AL671883.3-201ENST00000603274 991 ntBASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC24.34■■□□□ 1.49
USHBP1Q8N6Y0 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC24.33■■□□□ 1.49
USHBP1Q8N6Y0 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms