Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 AL049812.1-201ENST00000432563 2267 ntBASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 CHCHD2P8-201ENST00000429873 447 ntBASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 AP002383.4-201ENST00000442518 975 ntBASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 AP003733.1-201ENST00000491725 852 ntBASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 AL121772.3-201ENST00000610840 674 ntBASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 AC023511.2-201ENST00000618803 211 ntBASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HDDC3Q8N4P3 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 KRT18P1-202ENST00000452408 1331 ntBASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 MTMR9LP-203ENST00000426597 1545 ntBASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 AL022342.1-201ENST00000400363 863 ntBASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 AC009065.1-201ENST00000564055 1225 ntBASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 AC005332.7-201ENST00000614046 2005 ntBASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 Z83836.1-201ENST00000624605 1642 ntBASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HDDC3Q8N4P3 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 AC091304.2-201ENST00000564639 760 ntBASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 AC005332.3-201ENST00000589904 676 ntBASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 AC006538.3-201ENST00000612495 578 ntBASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 KRT8P50-201ENST00000562022 1438 ntBASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
HDDC3Q8N4P3 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 EMBP1-201ENST00000458200 901 ntBASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
HDDC3Q8N4P3 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms