Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 KRT18P28-201ENST00000453838 1332 ntBASIC19.57■□□□□ 0.72
CHD9Q3L8U1 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.57■□□□□ 0.72
CHD9Q3L8U1 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 AC023274.1-201ENST00000418278 595 ntBASIC19.56■□□□□ 0.72
CHD9Q3L8U1 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 AC125634.1-201ENST00000438758 1403 ntBASIC19.56■□□□□ 0.72
CHD9Q3L8U1 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHD9Q3L8U1 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 KRT8P50-201ENST00000562022 1438 ntBASIC19.55■□□□□ 0.72
CHD9Q3L8U1 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.55■□□□□ 0.72
CHD9Q3L8U1 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 SPCS2P1-201ENST00000561636 679 ntBASIC19.55■□□□□ 0.72
CHD9Q3L8U1 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 MTDHP5-201ENST00000598980 586 ntBASIC19.55■□□□□ 0.72
CHD9Q3L8U1 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.55■□□□□ 0.72
CHD9Q3L8U1 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 CNN2P11-201ENST00000429351 262 ntBASIC19.54■□□□□ 0.72
CHD9Q3L8U1 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 AC008735.5-201ENST00000623544 497 ntBASIC19.54■□□□□ 0.72
CHD9Q3L8U1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 OR7E14P-202ENST00000530490 1290 ntBASIC19.54■□□□□ 0.72
CHD9Q3L8U1 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 ALG1L5P-201ENST00000482043 771 ntBASIC19.54■□□□□ 0.72
CHD9Q3L8U1 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.54■□□□□ 0.72
CHD9Q3L8U1 IRX1P1-201ENST00000438849 1838 ntBASIC19.53■□□□□ 0.72
CHD9Q3L8U1 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHD9Q3L8U1 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms