Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
PRKDCP78527 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC13.34□□□□□ -0.27
PRKDCP78527 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
PRKDCP78527 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
PRKDCP78527 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
PRKDCP78527 ANKRD20A8P-203ENST00000641373 517 ntBASIC13.34□□□□□ -0.27
PRKDCP78527 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC13.34□□□□□ -0.27
PRKDCP78527 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC13.34□□□□□ -0.27
PRKDCP78527 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC13.34□□□□□ -0.27
PRKDCP78527 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.34□□□□□ -0.27
PRKDCP78527 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC13.34□□□□□ -0.27
PRKDCP78527 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
PRKDCP78527 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
PRKDCP78527 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
PRKDCP78527 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
PRKDCP78527 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC13.33□□□□□ -0.27
PRKDCP78527 HCG4B-203ENST00000450128 991 ntBASIC13.33□□□□□ -0.27
PRKDCP78527 NOP2-220ENST00000545915 630 ntTSL 2 BASIC13.33□□□□□ -0.27
PRKDCP78527 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.33□□□□□ -0.27
PRKDCP78527 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.33□□□□□ -0.27
PRKDCP78527 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 ZNF815P-204ENST00000434898 1737 ntBASIC13.33□□□□□ -0.28
PRKDCP78527 AC125634.1-201ENST00000438758 1403 ntBASIC13.33□□□□□ -0.28
PRKDCP78527 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC13.33□□□□□ -0.28
PRKDCP78527 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 ABCD1P5-201ENST00000445663 754 ntBASIC13.33□□□□□ -0.28
PRKDCP78527 SDCCAG3P1-201ENST00000589292 1150 ntBASIC13.33□□□□□ -0.28
PRKDCP78527 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
PRKDCP78527 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC13.33□□□□□ -0.28
PRKDCP78527 AC009237.14-201ENST00000609975 1594 ntBASIC13.33□□□□□ -0.28
PRKDCP78527 AC034236.2-201ENST00000606662 1610 ntBASIC13.33□□□□□ -0.28
PRKDCP78527 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 CBR1-202ENST00000399191 838 ntTSL 3 BASIC13.33□□□□□ -0.28
PRKDCP78527 AC015911.4-201ENST00000588022 1070 ntBASIC13.33□□□□□ -0.28
PRKDCP78527 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC13.33□□□□□ -0.28
PRKDCP78527 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC13.33□□□□□ -0.28
PRKDCP78527 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
PRKDCP78527 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 MRPL20P1-201ENST00000400819 433 ntBASIC13.32□□□□□ -0.28
PRKDCP78527 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 AC023141.5-201ENST00000458585 616 ntBASIC13.32□□□□□ -0.28
PRKDCP78527 OARD1-208ENST00000469104 704 ntTSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC13.32□□□□□ -0.28
PRKDCP78527 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC13.32□□□□□ -0.28
PRKDCP78527 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC13.32□□□□□ -0.28
PRKDCP78527 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 AL512408.1-201ENST00000569378 2000 ntBASIC13.32□□□□□ -0.28
PRKDCP78527 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
PRKDCP78527 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC13.32□□□□□ -0.28
PRKDCP78527 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC13.32□□□□□ -0.28
PRKDCP78527 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC13.32□□□□□ -0.28
PRKDCP78527 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.32□□□□□ -0.28
PRKDCP78527 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC13.32□□□□□ -0.28
PRKDCP78527 DUT-210ENST00000559935 569 ntTSL 3 BASIC13.32□□□□□ -0.28
PRKDCP78527 AC093520.2-201ENST00000561830 333 ntBASIC13.32□□□□□ -0.28
PRKDCP78527 AC018845.2-201ENST00000568326 409 ntBASIC13.32□□□□□ -0.28
PRKDCP78527 OR7E47P-204ENST00000575924 449 ntBASIC13.32□□□□□ -0.28
PRKDCP78527 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 AP000867.4-201ENST00000641616 219 ntBASIC13.32□□□□□ -0.28
PRKDCP78527 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
PRKDCP78527 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
PRKDCP78527 AC006333.2-201ENST00000607957 2099 ntBASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms