Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF4P78317 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF4P78317 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF4P78317 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.12■□□□□ 0.33
RNF4P78317 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.12■□□□□ 0.33
RNF4P78317 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF4P78317 AC009065.1-201ENST00000564055 1225 ntBASIC17.12■□□□□ 0.33
RNF4P78317 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.12■□□□□ 0.33
RNF4P78317 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.12■□□□□ 0.33
RNF4P78317 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RNF4P78317 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.12■□□□□ 0.33
RNF4P78317 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RNF4P78317 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.12■□□□□ 0.33
RNF4P78317 LINC01311-201ENST00000565162 1445 ntBASIC17.12■□□□□ 0.33
RNF4P78317 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
RNF4P78317 AL163051.1-201ENST00000569214 1512 ntBASIC17.11■□□□□ 0.33
RNF4P78317 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
RNF4P78317 MYLKP1-201ENST00000509077 1580 ntBASIC17.11■□□□□ 0.33
RNF4P78317 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RNF4P78317 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
RNF4P78317 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF4P78317 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 AC092597.1-201ENST00000487352 616 ntBASIC17.11■□□□□ 0.33
RNF4P78317 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
RNF4P78317 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.11■□□□□ 0.33
RNF4P78317 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.11■□□□□ 0.33
RNF4P78317 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.11■□□□□ 0.33
RNF4P78317 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
RNF4P78317 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
RNF4P78317 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RNF4P78317 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RNF4P78317 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.1■□□□□ 0.33
RNF4P78317 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.1■□□□□ 0.33
RNF4P78317 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 HBZP1-201ENST00000354915 429 ntBASIC17.1■□□□□ 0.33
RNF4P78317 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.1■□□□□ 0.33
RNF4P78317 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
RNF4P78317 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RNF4P78317 AC083849.1-201ENST00000615227 514 ntBASIC17.1■□□□□ 0.33
RNF4P78317 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 AC079602.3-201ENST00000623931 403 ntBASIC17.1■□□□□ 0.33
RNF4P78317 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.1■□□□□ 0.33
RNF4P78317 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
RNF4P78317 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
RNF4P78317 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.1■□□□□ 0.33
RNF4P78317 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.1■□□□□ 0.33
RNF4P78317 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
RNF4P78317 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.09■□□□□ 0.33
RNF4P78317 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF4P78317 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
RNF4P78317 AC087289.5-201ENST00000586076 3175 ntBASIC17.09■□□□□ 0.33
RNF4P78317 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.09■□□□□ 0.33
RNF4P78317 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF4P78317 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.09■□□□□ 0.33
RNF4P78317 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC17.09■□□□□ 0.33
RNF4P78317 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.09■□□□□ 0.33
RNF4P78317 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.09■□□□□ 0.33
RNF4P78317 ZNF444P1-201ENST00000559497 298 ntBASIC17.09■□□□□ 0.33
RNF4P78317 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.09■□□□□ 0.33
RNF4P78317 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
RNF4P78317 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.09■□□□□ 0.33
RNF4P78317 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms