Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC125634.1-201ENST00000438758 1403 ntBASIC19.24■□□□□ 0.67
COL6A3P12111 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.24■□□□□ 0.67
COL6A3P12111 TSPY16P-201ENST00000449843 468 ntBASIC19.24■□□□□ 0.67
COL6A3P12111 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC19.24■□□□□ 0.67
COL6A3P12111 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.24■□□□□ 0.67
COL6A3P12111 AL109659.2-201ENST00000606809 1674 ntBASIC19.24■□□□□ 0.67
COL6A3P12111 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 AL049796.1-201ENST00000565336 1766 ntBASIC19.24■□□□□ 0.67
COL6A3P12111 SDHAP1-207ENST00000440850 2000 ntBASIC19.24■□□□□ 0.67
COL6A3P12111 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
COL6A3P12111 RAC2-204ENST00000406508 893 ntTSL 5 BASIC19.24■□□□□ 0.67
COL6A3P12111 TFAMP1-201ENST00000412727 736 ntBASIC19.24■□□□□ 0.67
COL6A3P12111 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
COL6A3P12111 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL6A3P12111 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A3P12111 GUSBP5-202ENST00000510805 1989 ntBASIC19.23■□□□□ 0.67
COL6A3P12111 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A3P12111 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A3P12111 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC19.23■□□□□ 0.67
COL6A3P12111 CRB3P1-201ENST00000449338 276 ntBASIC19.23■□□□□ 0.67
COL6A3P12111 LINC00628-201ENST00000628516 1289 ntBASIC19.23■□□□□ 0.67
COL6A3P12111 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A3P12111 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
COL6A3P12111 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
COL6A3P12111 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A3P12111 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A3P12111 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A3P12111 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A3P12111 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A3P12111 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A3P12111 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC19.23■□□□□ 0.67
COL6A3P12111 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL6A3P12111 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.23■□□□□ 0.67
COL6A3P12111 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL6A3P12111 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A3P12111 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL6A3P12111 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A3P12111 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A3P12111 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
COL6A3P12111 AC007225.1-201ENST00000566331 1836 ntBASIC19.22■□□□□ 0.67
COL6A3P12111 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A3P12111 LINC01126-201ENST00000623515 1646 ntBASIC19.22■□□□□ 0.67
COL6A3P12111 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A3P12111 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
COL6A3P12111 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A3P12111 DUX4L27-201ENST00000554796 1261 ntBASIC19.22■□□□□ 0.67
COL6A3P12111 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A3P12111 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.22■□□□□ 0.67
COL6A3P12111 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A3P12111 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A3P12111 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A3P12111 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A3P12111 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A3P12111 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19.22■□□□□ 0.67
COL6A3P12111 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
COL6A3P12111 AC018845.2-201ENST00000568326 409 ntBASIC19.22■□□□□ 0.67
COL6A3P12111 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL6A3P12111 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A3P12111 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A3P12111 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
COL6A3P12111 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A3P12111 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.21■□□□□ 0.67
COL6A3P12111 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL6A3P12111 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
COL6A3P12111 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.21■□□□□ 0.67
COL6A3P12111 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A3P12111 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A3P12111 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A3P12111 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A3P12111 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A3P12111 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A3P12111 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC19.21■□□□□ 0.67
COL6A3P12111 FAM207CP-201ENST00000443486 507 ntBASIC19.21■□□□□ 0.67
COL6A3P12111 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A3P12111 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL6A3P12111 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A3P12111 AL596325.1-201ENST00000563991 1082 ntBASIC19.2■□□□□ 0.66
COL6A3P12111 NAA60-208ENST00000570819 833 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A3P12111 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.2■□□□□ 0.66
COL6A3P12111 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.2■□□□□ 0.66
COL6A3P12111 AL513210.1-201ENST00000629608 234 ntBASIC19.2■□□□□ 0.66
COL6A3P12111 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
COL6A3P12111 KRT89P-201ENST00000620027 1478 ntBASIC19.2■□□□□ 0.66
COL6A3P12111 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
COL6A3P12111 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL6A3P12111 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A3P12111 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A3P12111 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A3P12111 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.2■□□□□ 0.66
COL6A3P12111 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL6A3P12111 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms