Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CXCL1P09341 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC14.38□□□□□ -0.11
CXCL1P09341 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC14.38□□□□□ -0.11
CXCL1P09341 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
CXCL1P09341 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CXCL1P09341 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CXCL1P09341 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC14.38□□□□□ -0.11
CXCL1P09341 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC14.38□□□□□ -0.11
CXCL1P09341 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC14.38□□□□□ -0.11
CXCL1P09341 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.38□□□□□ -0.11
CXCL1P09341 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL1P09341 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CXCL1P09341 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.37□□□□□ -0.11
CXCL1P09341 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.37□□□□□ -0.11
CXCL1P09341 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.37□□□□□ -0.11
CXCL1P09341 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.37□□□□□ -0.11
CXCL1P09341 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.37□□□□□ -0.11
CXCL1P09341 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
CXCL1P09341 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CXCL1P09341 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC14.37□□□□□ -0.11
CXCL1P09341 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CXCL1P09341 JTB-203ENST00000368589 1216 ntTSL 2 BASIC14.37□□□□□ -0.11
CXCL1P09341 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CXCL1P09341 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC14.37□□□□□ -0.11
CXCL1P09341 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CXCL1P09341 BRWD1-AS2-201ENST00000603064 1028 ntBASIC14.37□□□□□ -0.11
CXCL1P09341 AC016405.3-201ENST00000607710 860 ntBASIC14.37□□□□□ -0.11
CXCL1P09341 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CXCL1P09341 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
CXCL1P09341 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CXCL1P09341 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CXCL1P09341 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CXCL1P09341 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
CXCL1P09341 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.37□□□□□ -0.11
CXCL1P09341 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CXCL1P09341 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
CXCL1P09341 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.36□□□□□ -0.11
CXCL1P09341 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.36□□□□□ -0.11
CXCL1P09341 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC14.36□□□□□ -0.11
CXCL1P09341 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 RARRES2P4-201ENST00000514074 484 ntBASIC14.36□□□□□ -0.11
CXCL1P09341 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CXCL1P09341 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CXCL1P09341 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CXCL1P09341 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms