Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SIX3O95343 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 AC097488.1-201ENST00000507834 756 ntBASIC18.12■□□□□ 0.49
SIX3O95343 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX3O95343 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC18.12■□□□□ 0.49
SIX3O95343 DGCR10-201ENST00000609839 495 ntBASIC18.12■□□□□ 0.49
SIX3O95343 REXO1L10P-201ENST00000615707 1290 ntBASIC18.12■□□□□ 0.49
SIX3O95343 REXO1L12P-201ENST00000622156 912 ntBASIC18.12■□□□□ 0.49
SIX3O95343 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.12■□□□□ 0.49
SIX3O95343 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.12■□□□□ 0.49
SIX3O95343 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
SIX3O95343 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SIX3O95343 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
SIX3O95343 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX3O95343 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX3O95343 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.11■□□□□ 0.49
SIX3O95343 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX3O95343 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.11■□□□□ 0.49
SIX3O95343 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
SIX3O95343 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX3O95343 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SIX3O95343 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.11■□□□□ 0.49
SIX3O95343 AC233702.5-201ENST00000584107 538 ntBASIC18.11■□□□□ 0.49
SIX3O95343 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.11■□□□□ 0.49
SIX3O95343 AL049637.2-201ENST00000641778 930 ntBASIC18.11■□□□□ 0.49
SIX3O95343 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SIX3O95343 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX3O95343 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SIX3O95343 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.11■□□□□ 0.49
SIX3O95343 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX3O95343 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SIX3O95343 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.11■□□□□ 0.49
SIX3O95343 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.11■□□□□ 0.49
SIX3O95343 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.11■□□□□ 0.49
SIX3O95343 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SIX3O95343 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
SIX3O95343 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SIX3O95343 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX3O95343 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.1■□□□□ 0.49
SIX3O95343 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX3O95343 MIR564-202ENST00000385049 94 ntBASIC18.1■□□□□ 0.49
SIX3O95343 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX3O95343 AC012618.2-201ENST00000428058 849 ntBASIC18.1■□□□□ 0.49
SIX3O95343 MCCD1P1-208ENST00000445732 328 ntBASIC18.1■□□□□ 0.49
SIX3O95343 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 KRT18P41-201ENST00000518924 1277 ntBASIC18.1■□□□□ 0.49
SIX3O95343 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.1■□□□□ 0.49
SIX3O95343 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
SIX3O95343 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.1■□□□□ 0.49
SIX3O95343 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SIX3O95343 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SIX3O95343 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX3O95343 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.09■□□□□ 0.49
SIX3O95343 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SIX3O95343 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX3O95343 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
SIX3O95343 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.09■□□□□ 0.49
SIX3O95343 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SIX3O95343 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX3O95343 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX3O95343 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.09■□□□□ 0.49
SIX3O95343 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SIX3O95343 CRYGFP-201ENST00000418459 633 ntBASIC18.09■□□□□ 0.49
SIX3O95343 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
SIX3O95343 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.09■□□□□ 0.49
SIX3O95343 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.09■□□□□ 0.49
SIX3O95343 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.09■□□□□ 0.49
SIX3O95343 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SIX3O95343 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX3O95343 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SIX3O95343 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SIX3O95343 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.09■□□□□ 0.49
SIX3O95343 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.09■□□□□ 0.49
SIX3O95343 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.09■□□□□ 0.49
SIX3O95343 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SIX3O95343 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.08■□□□□ 0.49
SIX3O95343 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
SIX3O95343 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.08■□□□□ 0.49
SIX3O95343 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
SIX3O95343 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms