Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
PTCD1O75127 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
PTCD1O75127 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
PTCD1O75127 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PTCD1O75127 KRT89P-201ENST00000620027 1478 ntBASIC23.74■■□□□ 1.39
PTCD1O75127 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PTCD1O75127 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC23.74■■□□□ 1.39
PTCD1O75127 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC23.74■■□□□ 1.39
PTCD1O75127 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC23.73■■□□□ 1.39
PTCD1O75127 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 HES2-202ENST00000377836 507 ntTSL 2 BASIC23.73■■□□□ 1.39
PTCD1O75127 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
PTCD1O75127 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC23.73■■□□□ 1.39
PTCD1O75127 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC23.73■■□□□ 1.39
PTCD1O75127 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
PTCD1O75127 AC009065.1-201ENST00000564055 1225 ntBASIC23.73■■□□□ 1.39
PTCD1O75127 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC23.73■■□□□ 1.39
PTCD1O75127 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 AC120114.3-201ENST00000611923 658 ntBASIC23.73■■□□□ 1.39
PTCD1O75127 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
PTCD1O75127 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC23.73■■□□□ 1.39
PTCD1O75127 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.73■■□□□ 1.39
PTCD1O75127 MTMR9LP-203ENST00000426597 1545 ntBASIC23.73■■□□□ 1.39
PTCD1O75127 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
PTCD1O75127 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PTCD1O75127 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PTCD1O75127 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC23.72■■□□□ 1.39
PTCD1O75127 PENK-208ENST00000523051 772 ntTSL 5 BASIC23.72■■□□□ 1.39
PTCD1O75127 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC23.72■■□□□ 1.39
PTCD1O75127 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PTCD1O75127 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC23.72■■□□□ 1.39
PTCD1O75127 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC23.72■■□□□ 1.39
PTCD1O75127 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PTCD1O75127 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PTCD1O75127 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
PTCD1O75127 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PTCD1O75127 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC23.72■■□□□ 1.39
PTCD1O75127 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.72■■□□□ 1.39
PTCD1O75127 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.72■■□□□ 1.39
PTCD1O75127 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PTCD1O75127 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PTCD1O75127 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC23.71■■□□□ 1.39
PTCD1O75127 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC23.71■■□□□ 1.39
PTCD1O75127 AC093484.2-201ENST00000580996 2166 ntBASIC23.71■■□□□ 1.39
PTCD1O75127 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC23.71■■□□□ 1.39
PTCD1O75127 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 AL163051.1-201ENST00000569214 1512 ntBASIC23.71■■□□□ 1.39
PTCD1O75127 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC23.71■■□□□ 1.39
PTCD1O75127 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC23.71■■□□□ 1.39
PTCD1O75127 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC23.71■■□□□ 1.39
PTCD1O75127 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC23.71■■□□□ 1.39
PTCD1O75127 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 AL590627.1-203ENST00000421194 1026 ntBASIC23.71■■□□□ 1.39
PTCD1O75127 MOK-208ENST00000519058 917 ntTSL 2 BASIC23.71■■□□□ 1.39
PTCD1O75127 GPALPP1-207ENST00000611650 899 ntBASIC23.71■■□□□ 1.39
PTCD1O75127 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PTCD1O75127 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
PTCD1O75127 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
PTCD1O75127 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
PTCD1O75127 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.39
PTCD1O75127 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
PTCD1O75127 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC23.7■■□□□ 1.38
PTCD1O75127 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCD1O75127 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCD1O75127 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCD1O75127 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC23.7■■□□□ 1.38
PTCD1O75127 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCD1O75127 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCD1O75127 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
PTCD1O75127 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC23.7■■□□□ 1.38
PTCD1O75127 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC23.7■■□□□ 1.38
PTCD1O75127 AL671883.3-201ENST00000603274 991 ntBASIC23.7■■□□□ 1.38
PTCD1O75127 AC006538.3-201ENST00000612495 578 ntBASIC23.7■■□□□ 1.38
PTCD1O75127 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC23.7■■□□□ 1.38
PTCD1O75127 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC23.7■■□□□ 1.38
PTCD1O75127 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
PTCD1O75127 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC23.7■■□□□ 1.38
PTCD1O75127 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
PTCD1O75127 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC23.7■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms