Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PRKNO60260 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.23■□□□□ 0.35
PRKNO60260 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
PRKNO60260 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PRKNO60260 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.23■□□□□ 0.35
PRKNO60260 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.22■□□□□ 0.35
PRKNO60260 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.22■□□□□ 0.35
PRKNO60260 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.22■□□□□ 0.35
PRKNO60260 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
PRKNO60260 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.22■□□□□ 0.35
PRKNO60260 STARP1-201ENST00000397973 869 ntBASIC17.22■□□□□ 0.35
PRKNO60260 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.22■□□□□ 0.35
PRKNO60260 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.22■□□□□ 0.35
PRKNO60260 AC112907.2-201ENST00000448639 330 ntBASIC17.22■□□□□ 0.35
PRKNO60260 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.22■□□□□ 0.35
PRKNO60260 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.22■□□□□ 0.35
PRKNO60260 HYMAI.1-201ENST00000620949 238 ntBASIC17.22■□□□□ 0.35
PRKNO60260 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PRKNO60260 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PRKNO60260 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
PRKNO60260 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PRKNO60260 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PRKNO60260 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 HOXB1-202ENST00000577092 1414 ntBASIC17.21■□□□□ 0.35
PRKNO60260 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.21■□□□□ 0.35
PRKNO60260 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.21■□□□□ 0.35
PRKNO60260 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.21■□□□□ 0.35
PRKNO60260 RASA4DP-201ENST00000460726 1199 ntBASIC17.21■□□□□ 0.35
PRKNO60260 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.21■□□□□ 0.35
PRKNO60260 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
PRKNO60260 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.21■□□□□ 0.35
PRKNO60260 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.21■□□□□ 0.35
PRKNO60260 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.21■□□□□ 0.35
PRKNO60260 AL157888.1-201ENST00000631930 593 ntBASIC17.21■□□□□ 0.35
PRKNO60260 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.21■□□□□ 0.35
PRKNO60260 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.21■□□□□ 0.35
PRKNO60260 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PRKNO60260 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
PRKNO60260 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PRKNO60260 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.2■□□□□ 0.34
PRKNO60260 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PRKNO60260 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PRKNO60260 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 AL671277.2-201ENST00000458060 996 ntBASIC17.2■□□□□ 0.34
PRKNO60260 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 AC092597.1-201ENST00000487352 616 ntBASIC17.2■□□□□ 0.34
PRKNO60260 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.2■□□□□ 0.34
PRKNO60260 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.2■□□□□ 0.34
PRKNO60260 AC104390.1-201ENST00000555663 520 ntBASIC17.2■□□□□ 0.34
PRKNO60260 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.2■□□□□ 0.34
PRKNO60260 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
PRKNO60260 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.2■□□□□ 0.34
PRKNO60260 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PRKNO60260 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.2■□□□□ 0.34
PRKNO60260 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PRKNO60260 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
PRKNO60260 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.2■□□□□ 0.34
PRKNO60260 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PRKNO60260 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms