Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP28Q96RU2 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.22■□□□□ 0.99
USP28Q96RU2 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
USP28Q96RU2 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.22■□□□□ 0.99
USP28Q96RU2 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.22■□□□□ 0.99
USP28Q96RU2 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.22■□□□□ 0.99
USP28Q96RU2 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.22■□□□□ 0.99
USP28Q96RU2 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP28Q96RU2 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP28Q96RU2 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP28Q96RU2 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.22■□□□□ 0.99
USP28Q96RU2 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP28Q96RU2 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.21■□□□□ 0.99
USP28Q96RU2 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
USP28Q96RU2 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.21■□□□□ 0.99
USP28Q96RU2 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP28Q96RU2 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
USP28Q96RU2 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP28Q96RU2 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP28Q96RU2 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.21■□□□□ 0.99
USP28Q96RU2 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP28Q96RU2 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP28Q96RU2 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.21■□□□□ 0.99
USP28Q96RU2 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.21■□□□□ 0.99
USP28Q96RU2 Z99916.2-201ENST00000604037 246 ntBASIC21.21■□□□□ 0.99
USP28Q96RU2 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC21.21■□□□□ 0.99
USP28Q96RU2 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP28Q96RU2 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.21■□□□□ 0.99
USP28Q96RU2 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP28Q96RU2 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP28Q96RU2 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
USP28Q96RU2 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP28Q96RU2 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.21■□□□□ 0.99
USP28Q96RU2 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
USP28Q96RU2 KRT8P50-201ENST00000562022 1438 ntBASIC21.21■□□□□ 0.99
USP28Q96RU2 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
USP28Q96RU2 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
USP28Q96RU2 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
USP28Q96RU2 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.2■□□□□ 0.99
USP28Q96RU2 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
USP28Q96RU2 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
USP28Q96RU2 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
USP28Q96RU2 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC21.2■□□□□ 0.98
USP28Q96RU2 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.2■□□□□ 0.98
USP28Q96RU2 CRYGFP-201ENST00000418459 633 ntBASIC21.2■□□□□ 0.98
USP28Q96RU2 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
USP28Q96RU2 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.2■□□□□ 0.98
USP28Q96RU2 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC21.2■□□□□ 0.98
USP28Q96RU2 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.2■□□□□ 0.98
USP28Q96RU2 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP28Q96RU2 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
USP28Q96RU2 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
USP28Q96RU2 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
USP28Q96RU2 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC21.19■□□□□ 0.98
USP28Q96RU2 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.19■□□□□ 0.98
USP28Q96RU2 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
USP28Q96RU2 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 CA15P1-201ENST00000481698 905 ntBASIC21.19■□□□□ 0.98
USP28Q96RU2 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.19■□□□□ 0.98
USP28Q96RU2 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.19■□□□□ 0.98
USP28Q96RU2 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
USP28Q96RU2 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 MME-217ENST00000616757 1315 ntTSL 5 BASIC21.19■□□□□ 0.98
USP28Q96RU2 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.19■□□□□ 0.98
USP28Q96RU2 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
USP28Q96RU2 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
USP28Q96RU2 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 REXO1L9P-201ENST00000604264 2108 ntBASIC21.19■□□□□ 0.98
USP28Q96RU2 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.19■□□□□ 0.98
USP28Q96RU2 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP28Q96RU2 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.18■□□□□ 0.98
USP28Q96RU2 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.18■□□□□ 0.98
USP28Q96RU2 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms