Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 VENTXP7-201ENST00000475503 772 ntBASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 AC091607.1-201ENST00000490318 1060 ntBASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 AC009065.1-201ENST00000564055 1225 ntBASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 Z98044.1-201ENST00000632503 1764 ntBASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPAS3Q8IXF0 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 AC079776.4-201ENST00000511039 504 ntBASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.17■□□□□ 0.66
NPAS3Q8IXF0 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 NUS1P2-201ENST00000417358 873 ntBASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 AC023511.2-201ENST00000618803 211 ntBASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 KRT8P50-201ENST00000562022 1438 ntBASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
NPAS3Q8IXF0 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 TSPY12P-201ENST00000421279 868 ntBASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 SAPCD2P3-201ENST00000455031 850 ntBASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 REXO1L6P-202ENST00000619970 1078 ntBASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
NPAS3Q8IXF0 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
NPAS3Q8IXF0 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NPAS3Q8IXF0 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
NPAS3Q8IXF0 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
NPAS3Q8IXF0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.14■□□□□ 0.65
NPAS3Q8IXF0 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NPAS3Q8IXF0 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NPAS3Q8IXF0 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
NPAS3Q8IXF0 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms