Protein–RNA interactions for Protein: Q12824

SMARCB1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, humanhuman

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1Q12824 MYLKP1-201ENST00000509077 1580 ntBASIC19.44■□□□□ 0.7
SMARCB1Q12824 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCB1Q12824 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 AP002414.4-201ENST00000589764 1148 ntBASIC19.43■□□□□ 0.7
SMARCB1Q12824 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMARCB1Q12824 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SMARCB1Q12824 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 MIR3652-201ENST00000579335 131 ntBASIC19.42■□□□□ 0.7
SMARCB1Q12824 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 CLEC4GP1-201ENST00000596555 870 ntBASIC19.42■□□□□ 0.7
SMARCB1Q12824 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 KRT18P1-202ENST00000452408 1331 ntBASIC19.42■□□□□ 0.7
SMARCB1Q12824 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.42■□□□□ 0.7
SMARCB1Q12824 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMARCB1Q12824 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCB1Q12824 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCB1Q12824 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SMARCB1Q12824 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCB1Q12824 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCB1Q12824 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.41■□□□□ 0.7
SMARCB1Q12824 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCB1Q12824 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCB1Q12824 AC113404.2-201ENST00000507884 177 ntBASIC19.41■□□□□ 0.7
SMARCB1Q12824 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCB1Q12824 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.41■□□□□ 0.7
SMARCB1Q12824 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.41■□□□□ 0.7
SMARCB1Q12824 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.41■□□□□ 0.7
SMARCB1Q12824 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
SMARCB1Q12824 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SMARCB1Q12824 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMARCB1Q12824 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SMARCB1Q12824 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCB1Q12824 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCB1Q12824 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SMARCB1Q12824 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCB1Q12824 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.4■□□□□ 0.7
SMARCB1Q12824 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SMARCB1Q12824 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCB1Q12824 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCB1Q12824 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SMARCB1Q12824 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.4■□□□□ 0.7
SMARCB1Q12824 DUSP5P1-201ENST00000441325 1139 ntBASIC19.4■□□□□ 0.7
SMARCB1Q12824 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.4■□□□□ 0.7
SMARCB1Q12824 GUSBP12-201ENST00000513727 720 ntBASIC19.4■□□□□ 0.7
SMARCB1Q12824 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.4■□□□□ 0.7
SMARCB1Q12824 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.4■□□□□ 0.7
SMARCB1Q12824 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms