Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.59■□□□□ 0.25
CLRN1P58418 AC126763.1-201ENST00000552015 2118 ntBASIC16.59■□□□□ 0.25
CLRN1P58418 FITM1-202ENST00000559294 800 ntBASIC16.59■□□□□ 0.25
CLRN1P58418 C2orf69P3-201ENST00000565542 1120 ntBASIC16.59■□□□□ 0.25
CLRN1P58418 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.59■□□□□ 0.25
CLRN1P58418 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.59■□□□□ 0.25
CLRN1P58418 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.59■□□□□ 0.25
CLRN1P58418 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.59■□□□□ 0.25
CLRN1P58418 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CLRN1P58418 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN1P58418 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN1P58418 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN1P58418 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.25
CLRN1P58418 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN1P58418 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN1P58418 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.58■□□□□ 0.25
CLRN1P58418 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.58■□□□□ 0.25
CLRN1P58418 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN1P58418 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
CLRN1P58418 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN1P58418 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN1P58418 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.58■□□□□ 0.24
CLRN1P58418 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN1P58418 TSPY17P-201ENST00000450329 467 ntBASIC16.58■□□□□ 0.24
CLRN1P58418 AC093827.2-201ENST00000512654 315 ntBASIC16.58■□□□□ 0.24
CLRN1P58418 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.58■□□□□ 0.24
CLRN1P58418 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CLRN1P58418 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN1P58418 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CLRN1P58418 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN1P58418 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
CLRN1P58418 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.58■□□□□ 0.24
CLRN1P58418 AL499627.1-201ENST00000569373 2188 ntBASIC16.58■□□□□ 0.24
CLRN1P58418 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN1P58418 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.58■□□□□ 0.24
CLRN1P58418 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.58■□□□□ 0.24
CLRN1P58418 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN1P58418 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN1P58418 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN1P58418 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
CLRN1P58418 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC16.58■□□□□ 0.24
CLRN1P58418 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
CLRN1P58418 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.57■□□□□ 0.24
CLRN1P58418 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 AC009113.1-201ENST00000570267 2443 ntBASIC16.57■□□□□ 0.24
CLRN1P58418 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.57■□□□□ 0.24
CLRN1P58418 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.57■□□□□ 0.24
CLRN1P58418 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.57■□□□□ 0.24
CLRN1P58418 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
CLRN1P58418 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CLRN1P58418 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.57■□□□□ 0.24
CLRN1P58418 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
CLRN1P58418 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.57■□□□□ 0.24
CLRN1P58418 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.57■□□□□ 0.24
CLRN1P58418 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.57■□□□□ 0.24
CLRN1P58418 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
CLRN1P58418 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.57■□□□□ 0.24
CLRN1P58418 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
CLRN1P58418 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
CLRN1P58418 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
CLRN1P58418 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
CLRN1P58418 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CLRN1P58418 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 KRT8P45-201ENST00000414328 1447 ntBASIC16.56■□□□□ 0.24
CLRN1P58418 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
CLRN1P58418 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
CLRN1P58418 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
CLRN1P58418 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms