Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VCPP55072 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.84■□□□□ 0.77
VCPP55072 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.84■□□□□ 0.77
VCPP55072 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.84■□□□□ 0.77
VCPP55072 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCPP55072 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCPP55072 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.84■□□□□ 0.77
VCPP55072 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.84■□□□□ 0.77
VCPP55072 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.84■□□□□ 0.77
VCPP55072 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.84■□□□□ 0.77
VCPP55072 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VCPP55072 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCPP55072 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.84■□□□□ 0.77
VCPP55072 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.84■□□□□ 0.77
VCPP55072 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.84■□□□□ 0.77
VCPP55072 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCPP55072 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.84■□□□□ 0.77
VCPP55072 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
VCPP55072 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VCPP55072 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
VCPP55072 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
VCPP55072 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VCPP55072 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
VCPP55072 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VCPP55072 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
VCPP55072 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.83■□□□□ 0.77
VCPP55072 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VCPP55072 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.83■□□□□ 0.77
VCPP55072 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VCPP55072 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VCPP55072 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VCPP55072 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VCPP55072 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.83■□□□□ 0.77
VCPP55072 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.83■□□□□ 0.77
VCPP55072 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.83■□□□□ 0.77
VCPP55072 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VCPP55072 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.83■□□□□ 0.77
VCPP55072 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.83■□□□□ 0.77
VCPP55072 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.83■□□□□ 0.77
VCPP55072 AC092329.2-201ENST00000598402 547 ntBASIC19.83■□□□□ 0.77
VCPP55072 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.83■□□□□ 0.77
VCPP55072 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VCPP55072 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VCPP55072 LINC01311-201ENST00000565162 1445 ntBASIC19.83■□□□□ 0.76
VCPP55072 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VCPP55072 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
VCPP55072 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VCPP55072 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
VCPP55072 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VCPP55072 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VCPP55072 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VCPP55072 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
VCPP55072 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.82■□□□□ 0.76
VCPP55072 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.82■□□□□ 0.76
VCPP55072 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
VCPP55072 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.82■□□□□ 0.76
VCPP55072 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.82■□□□□ 0.76
VCPP55072 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.82■□□□□ 0.76
VCPP55072 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.82■□□□□ 0.76
VCPP55072 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.82■□□□□ 0.76
VCPP55072 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.82■□□□□ 0.76
VCPP55072 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.82■□□□□ 0.76
VCPP55072 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
VCPP55072 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.82■□□□□ 0.76
VCPP55072 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.82■□□□□ 0.76
VCPP55072 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
VCPP55072 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
VCPP55072 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VCPP55072 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.81■□□□□ 0.76
VCPP55072 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.81■□□□□ 0.76
VCPP55072 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.81■□□□□ 0.76
VCPP55072 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.81■□□□□ 0.76
VCPP55072 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.81■□□□□ 0.76
VCPP55072 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.81■□□□□ 0.76
VCPP55072 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.81■□□□□ 0.76
VCPP55072 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VCPP55072 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.81■□□□□ 0.76
VCPP55072 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms