Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
HMGCS2P54868 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGCS2P54868 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
HMGCS2P54868 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 AC023511.2-201ENST00000618803 211 ntBASIC21.4■■□□□ 1.02
HMGCS2P54868 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGCS2P54868 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGCS2P54868 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGCS2P54868 AC007952.6-201ENST00000573168 2673 ntBASIC21.4■■□□□ 1.02
HMGCS2P54868 AC003957.1-201ENST00000625108 2673 ntBASIC21.4■■□□□ 1.02
HMGCS2P54868 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
HMGCS2P54868 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.02
HMGCS2P54868 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
HMGCS2P54868 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
HMGCS2P54868 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
HMGCS2P54868 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
HMGCS2P54868 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
HMGCS2P54868 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
HMGCS2P54868 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
HMGCS2P54868 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC21.39■■□□□ 1.01
HMGCS2P54868 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGCS2P54868 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGCS2P54868 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGCS2P54868 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGCS2P54868 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.39■■□□□ 1.01
HMGCS2P54868 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC21.39■■□□□ 1.01
HMGCS2P54868 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.39■■□□□ 1.01
HMGCS2P54868 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
HMGCS2P54868 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGCS2P54868 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
HMGCS2P54868 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.39■■□□□ 1.01
HMGCS2P54868 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.39■■□□□ 1.01
HMGCS2P54868 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGCS2P54868 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGCS2P54868 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.39■■□□□ 1.01
HMGCS2P54868 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGCS2P54868 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.39■■□□□ 1.01
HMGCS2P54868 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.39■■□□□ 1.01
HMGCS2P54868 AL163051.1-201ENST00000569214 1512 ntBASIC21.39■■□□□ 1.01
HMGCS2P54868 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGCS2P54868 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGCS2P54868 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGCS2P54868 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.38■■□□□ 1.01
HMGCS2P54868 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
HMGCS2P54868 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGCS2P54868 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGCS2P54868 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC21.38■■□□□ 1.01
HMGCS2P54868 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGCS2P54868 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
HMGCS2P54868 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC21.38■■□□□ 1.01
HMGCS2P54868 PENK-208ENST00000523051 772 ntTSL 5 BASIC21.38■■□□□ 1.01
HMGCS2P54868 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
HMGCS2P54868 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.38■■□□□ 1.01
HMGCS2P54868 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
HMGCS2P54868 TP73-AS1-207ENST00000624167 988 ntBASIC21.38■■□□□ 1.01
HMGCS2P54868 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGCS2P54868 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGCS2P54868 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.38■■□□□ 1.01
HMGCS2P54868 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.38■■□□□ 1.01
HMGCS2P54868 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 AC099343.3-201ENST00000605834 2503 ntBASIC21.37■■□□□ 1.01
HMGCS2P54868 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
HMGCS2P54868 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
HMGCS2P54868 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC21.37■■□□□ 1.01
HMGCS2P54868 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC21.37■■□□□ 1.01
HMGCS2P54868 AC120114.3-201ENST00000611923 658 ntBASIC21.37■■□□□ 1.01
HMGCS2P54868 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.37■■□□□ 1.01
HMGCS2P54868 AFG3L1P-217ENST00000557444 2447 ntBASIC21.37■■□□□ 1.01
HMGCS2P54868 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
HMGCS2P54868 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGCS2P54868 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC21.36■■□□□ 1.01
HMGCS2P54868 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGCS2P54868 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGCS2P54868 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGCS2P54868 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGCS2P54868 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGCS2P54868 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC21.36■■□□□ 1.01
HMGCS2P54868 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC21.36■■□□□ 1.01
HMGCS2P54868 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC21.36■■□□□ 1.01
HMGCS2P54868 BNIP3P18-201ENST00000593976 575 ntBASIC21.36■■□□□ 1.01
HMGCS2P54868 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.36■■□□□ 1.01
HMGCS2P54868 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
HMGCS2P54868 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms