Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.87■■□□□ 1.09
HMGB1P09429 MIR3180-4-201ENST00000582223 153 ntBASIC21.87■■□□□ 1.09
HMGB1P09429 AC112497.1-201ENST00000624824 639 ntBASIC21.87■■□□□ 1.09
HMGB1P09429 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 AL354751.1-201ENST00000412768 1863 ntBASIC21.87■■□□□ 1.09
HMGB1P09429 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
HMGB1P09429 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.87■■□□□ 1.09
HMGB1P09429 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
HMGB1P09429 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.87■■□□□ 1.09
HMGB1P09429 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
HMGB1P09429 LINC01568-207ENST00000641790 1380 ntBASIC21.87■■□□□ 1.09
HMGB1P09429 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.86■■□□□ 1.09
HMGB1P09429 KRT18P22-201ENST00000402024 1347 ntBASIC21.86■■□□□ 1.09
HMGB1P09429 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
HMGB1P09429 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
HMGB1P09429 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
HMGB1P09429 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.86■■□□□ 1.09
HMGB1P09429 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 ECEL1P2-202ENST00000465689 757 ntBASIC21.86■■□□□ 1.09
HMGB1P09429 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.86■■□□□ 1.09
HMGB1P09429 NAT14-202ENST00000587400 416 ntTSL 5 BASIC21.86■■□□□ 1.09
HMGB1P09429 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.86■■□□□ 1.09
HMGB1P09429 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.86■■□□□ 1.09
HMGB1P09429 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.86■■□□□ 1.09
HMGB1P09429 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.86■■□□□ 1.09
HMGB1P09429 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
HMGB1P09429 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.86■■□□□ 1.09
HMGB1P09429 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.86■■□□□ 1.09
HMGB1P09429 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.85■■□□□ 1.09
HMGB1P09429 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC21.85■■□□□ 1.09
HMGB1P09429 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.85■■□□□ 1.09
HMGB1P09429 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.85■■□□□ 1.09
HMGB1P09429 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
HMGB1P09429 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.85■■□□□ 1.09
HMGB1P09429 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.85■■□□□ 1.09
HMGB1P09429 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.85■■□□□ 1.09
HMGB1P09429 AC104390.1-201ENST00000555663 520 ntBASIC21.85■■□□□ 1.09
HMGB1P09429 AC009065.1-201ENST00000564055 1225 ntBASIC21.85■■□□□ 1.09
HMGB1P09429 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.85■■□□□ 1.09
HMGB1P09429 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.85■■□□□ 1.09
HMGB1P09429 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 AL390961.4-201ENST00000623958 2535 ntBASIC21.85■■□□□ 1.09
HMGB1P09429 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.85■■□□□ 1.09
HMGB1P09429 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.85■■□□□ 1.09
HMGB1P09429 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
HMGB1P09429 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 ABALON-201ENST00000629058 1903 ntBASIC21.84■■□□□ 1.09
HMGB1P09429 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.84■■□□□ 1.09
HMGB1P09429 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 MIR149-201ENST00000384879 89 ntBASIC21.84■■□□□ 1.09
HMGB1P09429 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.84■■□□□ 1.09
HMGB1P09429 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.84■■□□□ 1.09
HMGB1P09429 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.84■■□□□ 1.09
HMGB1P09429 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
HMGB1P09429 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms