Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HOXC4P09017 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HOXC4P09017 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.07■□□□□ 0.48
HOXC4P09017 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.07■□□□□ 0.48
HOXC4P09017 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
HOXC4P09017 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.07■□□□□ 0.48
HOXC4P09017 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.07■□□□□ 0.48
HOXC4P09017 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
HOXC4P09017 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.07■□□□□ 0.48
HOXC4P09017 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HOXC4P09017 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.07■□□□□ 0.48
HOXC4P09017 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.07■□□□□ 0.48
HOXC4P09017 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HOXC4P09017 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HOXC4P09017 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HOXC4P09017 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.07■□□□□ 0.48
HOXC4P09017 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HOXC4P09017 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HOXC4P09017 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
HOXC4P09017 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.06■□□□□ 0.48
HOXC4P09017 KRT18P1-202ENST00000452408 1331 ntBASIC18.06■□□□□ 0.48
HOXC4P09017 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
HOXC4P09017 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.06■□□□□ 0.48
HOXC4P09017 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 IPPK-202ENST00000375522 882 ntTSL 3 BASIC18.06■□□□□ 0.48
HOXC4P09017 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.06■□□□□ 0.48
HOXC4P09017 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
HOXC4P09017 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.06■□□□□ 0.48
HOXC4P09017 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 KRT126P-201ENST00000549467 1181 ntBASIC18.06■□□□□ 0.48
HOXC4P09017 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.06■□□□□ 0.48
HOXC4P09017 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.06■□□□□ 0.48
HOXC4P09017 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
HOXC4P09017 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.06■□□□□ 0.48
HOXC4P09017 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.06■□□□□ 0.48
HOXC4P09017 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
HOXC4P09017 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.06■□□□□ 0.48
HOXC4P09017 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HOXC4P09017 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HOXC4P09017 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HOXC4P09017 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.06■□□□□ 0.48
HOXC4P09017 AL353692.3-201ENST00000407031 1396 ntBASIC18.05■□□□□ 0.48
HOXC4P09017 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HOXC4P09017 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HOXC4P09017 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HOXC4P09017 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HOXC4P09017 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HOXC4P09017 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.05■□□□□ 0.48
HOXC4P09017 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.05■□□□□ 0.48
HOXC4P09017 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.05■□□□□ 0.48
HOXC4P09017 RN7SL606P-201ENST00000472779 293 ntBASIC18.05■□□□□ 0.48
HOXC4P09017 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HOXC4P09017 GUSBP12-201ENST00000513727 720 ntBASIC18.05■□□□□ 0.48
HOXC4P09017 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HOXC4P09017 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.05■□□□□ 0.48
HOXC4P09017 CLEC4GP1-201ENST00000596555 870 ntBASIC18.05■□□□□ 0.48
HOXC4P09017 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.05■□□□□ 0.48
HOXC4P09017 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HOXC4P09017 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HOXC4P09017 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.05■□□□□ 0.48
HOXC4P09017 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HOXC4P09017 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.05■□□□□ 0.48
HOXC4P09017 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HOXC4P09017 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
HOXC4P09017 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HOXC4P09017 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
HOXC4P09017 ANO7L1-203ENST00000602586 1720 ntBASIC18.04■□□□□ 0.48
HOXC4P09017 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HOXC4P09017 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.04■□□□□ 0.48
HOXC4P09017 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HOXC4P09017 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HOXC4P09017 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HOXC4P09017 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.04■□□□□ 0.48
HOXC4P09017 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.04■□□□□ 0.48
HOXC4P09017 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HOXC4P09017 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.04■□□□□ 0.48
HOXC4P09017 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HOXC4P09017 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.04■□□□□ 0.48
HOXC4P09017 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.04■□□□□ 0.48
HOXC4P09017 DUSP5P1-201ENST00000441325 1139 ntBASIC18.04■□□□□ 0.48
HOXC4P09017 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HOXC4P09017 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.04■□□□□ 0.48
HOXC4P09017 TPSP2-201ENST00000561760 610 ntBASIC18.04■□□□□ 0.48
HOXC4P09017 MIR3652-201ENST00000579335 131 ntBASIC18.04■□□□□ 0.48
HOXC4P09017 IGHV3-41-201ENST00000613121 348 ntBASIC18.04■□□□□ 0.48
HOXC4P09017 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HOXC4P09017 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms