Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP3Q9Y6I4 LINC01311-201ENST00000565162 1445 ntBASIC19.41■□□□□ 0.7
USP3Q9Y6I4 AL163051.1-201ENST00000569214 1512 ntBASIC19.41■□□□□ 0.7
USP3Q9Y6I4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.4■□□□□ 0.7
USP3Q9Y6I4 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP3Q9Y6I4 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP3Q9Y6I4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.39■□□□□ 0.7
USP3Q9Y6I4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
USP3Q9Y6I4 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 PVRIG2P-201ENST00000435460 978 ntBASIC19.39■□□□□ 0.69
USP3Q9Y6I4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 ZNF444P1-201ENST00000559497 298 ntBASIC19.39■□□□□ 0.69
USP3Q9Y6I4 AL136038.3-201ENST00000561909 1096 ntBASIC19.39■□□□□ 0.69
USP3Q9Y6I4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 MYLKP1-201ENST00000509077 1580 ntBASIC19.39■□□□□ 0.69
USP3Q9Y6I4 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 WIZP1-201ENST00000531444 2299 ntBASIC19.39■□□□□ 0.69
USP3Q9Y6I4 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
USP3Q9Y6I4 AL391807.1-203ENST00000604392 2365 ntBASIC19.39■□□□□ 0.69
USP3Q9Y6I4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.38■□□□□ 0.69
USP3Q9Y6I4 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USP3Q9Y6I4 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms