Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.88■□□□□ 0.77
SNX9Q9Y5X1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 AL031133.1-201ENST00000406807 723 ntBASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 AL671277.2-201ENST00000458060 996 ntBASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SNX9Q9Y5X1 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 AC018445.3-201ENST00000624177 1945 ntBASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 KRT8P50-201ENST00000562022 1438 ntBASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 AC098818.2-201ENST00000564925 2320 ntBASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 AL499627.1-201ENST00000569373 2188 ntBASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SNX9Q9Y5X1 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 KRT18P41-201ENST00000518924 1277 ntBASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SNX9Q9Y5X1 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 AC092597.1-201ENST00000487352 616 ntBASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 HYMAI.1-201ENST00000620949 238 ntBASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 ANO7L1-203ENST00000602586 1720 ntBASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SNX9Q9Y5X1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SNX9Q9Y5X1 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SNX9Q9Y5X1 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SNX9Q9Y5X1 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.83■□□□□ 0.77
SNX9Q9Y5X1 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SNX9Q9Y5X1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SNX9Q9Y5X1 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.83■□□□□ 0.77
SNX9Q9Y5X1 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms