Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SNED1Q8TER0 COX10-202ENST00000429152 875 ntTSL 2 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 AL355877.3-201ENST00000622820 899 ntBASIC22.57■■□□□ 1.2
SNED1Q8TER0 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 Z98044.1-201ENST00000632503 1764 ntBASIC22.57■■□□□ 1.2
SNED1Q8TER0 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SNED1Q8TER0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SNED1Q8TER0 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SNED1Q8TER0 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SNED1Q8TER0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SNED1Q8TER0 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 AC139887.3-201ENST00000568585 713 ntBASIC22.57■■□□□ 1.2
SNED1Q8TER0 PAM16-208ENST00000573553 722 ntTSL 2 BASIC22.57■■□□□ 1.2
SNED1Q8TER0 FAM215A-202ENST00000632077 792 ntBASIC22.57■■□□□ 1.2
SNED1Q8TER0 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SNED1Q8TER0 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SNED1Q8TER0 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SNED1Q8TER0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SNED1Q8TER0 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 MIR1233-2-201ENST00000408138 82 ntBASIC22.56■■□□□ 1.2
SNED1Q8TER0 MIR1233-1-201ENST00000408722 82 ntBASIC22.56■■□□□ 1.2
SNED1Q8TER0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SNED1Q8TER0 KRT18P41-201ENST00000518924 1277 ntBASIC22.56■■□□□ 1.2
SNED1Q8TER0 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
SNED1Q8TER0 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 AC011840.4-201ENST00000578471 627 ntBASIC22.56■■□□□ 1.2
SNED1Q8TER0 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 AL591684.3-201ENST00000605187 298 ntBASIC22.56■■□□□ 1.2
SNED1Q8TER0 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
SNED1Q8TER0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNED1Q8TER0 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNED1Q8TER0 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNED1Q8TER0 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNED1Q8TER0 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SNED1Q8TER0 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 BID-204ENST00000399767 2129 ntTSL 2 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SNED1Q8TER0 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SNED1Q8TER0 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
SNED1Q8TER0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SNED1Q8TER0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SNED1Q8TER0 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SNED1Q8TER0 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SNED1Q8TER0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SNED1Q8TER0 AC073130.3-201ENST00000624389 2278 ntBASIC22.54■■□□□ 1.2
SNED1Q8TER0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 FABP5-202ENST00000396359 986 ntTSL 5 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 BX842568.4-201ENST00000421222 227 ntBASIC22.54■■□□□ 1.2
SNED1Q8TER0 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 AC092865.5-201ENST00000545435 363 ntBASIC22.54■■□□□ 1.2
SNED1Q8TER0 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 AC145285.3-201ENST00000564603 959 ntBASIC22.54■■□□□ 1.2
SNED1Q8TER0 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
SNED1Q8TER0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SNED1Q8TER0 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms