Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMK1P53667 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.35■□□□□ 0.53
LIMK1P53667 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMK1P53667 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.35■□□□□ 0.53
LIMK1P53667 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIMK1P53667 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
LIMK1P53667 TERC-201ENST00000602385 541 ntBASIC18.35■□□□□ 0.53
LIMK1P53667 AC112497.1-201ENST00000624824 639 ntBASIC18.35■□□□□ 0.53
LIMK1P53667 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMK1P53667 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMK1P53667 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LIMK1P53667 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMK1P53667 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMK1P53667 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMK1P53667 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMK1P53667 AC004408.2-201ENST00000623613 2777 ntBASIC18.35■□□□□ 0.53
LIMK1P53667 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMK1P53667 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LIMK1P53667 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.34■□□□□ 0.53
LIMK1P53667 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMK1P53667 AL023284.2-201ENST00000405850 579 ntBASIC18.34■□□□□ 0.53
LIMK1P53667 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIMK1P53667 KRT18P67-201ENST00000432816 1264 ntBASIC18.34■□□□□ 0.53
LIMK1P53667 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.34■□□□□ 0.53
LIMK1P53667 FAM197Y8-203ENST00000450145 560 ntBASIC18.34■□□□□ 0.53
LIMK1P53667 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 POLD2P1-201ENST00000511220 997 ntBASIC18.34■□□□□ 0.53
LIMK1P53667 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.34■□□□□ 0.53
LIMK1P53667 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.34■□□□□ 0.53
LIMK1P53667 LINC02084-201ENST00000606069 1096 ntBASIC18.34■□□□□ 0.53
LIMK1P53667 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 AL390719.2-201ENST00000606993 987 ntBASIC18.34■□□□□ 0.53
LIMK1P53667 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.34■□□□□ 0.53
LIMK1P53667 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMK1P53667 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMK1P53667 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LIMK1P53667 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIMK1P53667 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMK1P53667 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIMK1P53667 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMK1P53667 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMK1P53667 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIMK1P53667 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.33■□□□□ 0.53
LIMK1P53667 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.33■□□□□ 0.53
LIMK1P53667 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIMK1P53667 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIMK1P53667 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMK1P53667 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
LIMK1P53667 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.33■□□□□ 0.53
LIMK1P53667 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
LIMK1P53667 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMK1P53667 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMK1P53667 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMK1P53667 AC005104.2-201ENST00000427818 678 ntBASIC18.33■□□□□ 0.52
LIMK1P53667 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMK1P53667 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMK1P53667 AC005332.3-201ENST00000589904 676 ntBASIC18.33■□□□□ 0.52
LIMK1P53667 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
LIMK1P53667 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMK1P53667 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMK1P53667 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
LIMK1P53667 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMK1P53667 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIMK1P53667 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LIMK1P53667 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMK1P53667 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMK1P53667 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMK1P53667 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIMK1P53667 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMK1P53667 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.52
LIMK1P53667 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMK1P53667 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMK1P53667 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.32■□□□□ 0.52
LIMK1P53667 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
LIMK1P53667 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LIMK1P53667 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
LIMK1P53667 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.32■□□□□ 0.52
LIMK1P53667 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMK1P53667 AF186996.4-201ENST00000467186 377 ntBASIC18.32■□□□□ 0.52
LIMK1P53667 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.32■□□□□ 0.52
LIMK1P53667 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMK1P53667 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms