Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.16■□□□□ 0.66
COPAP53621 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
COPAP53621 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
COPAP53621 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 AP000523.1-201ENST00000398242 1049 ntBASIC19.16■□□□□ 0.66
COPAP53621 PCED1CP-201ENST00000419887 785 ntBASIC19.16■□□□□ 0.66
COPAP53621 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.16■□□□□ 0.66
COPAP53621 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
COPAP53621 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.16■□□□□ 0.66
COPAP53621 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.16■□□□□ 0.66
COPAP53621 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
COPAP53621 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.16■□□□□ 0.66
COPAP53621 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.16■□□□□ 0.66
COPAP53621 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.16■□□□□ 0.66
COPAP53621 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.16■□□□□ 0.66
COPAP53621 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COPAP53621 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.16■□□□□ 0.66
COPAP53621 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
COPAP53621 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
COPAP53621 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.15■□□□□ 0.66
COPAP53621 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
COPAP53621 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.15■□□□□ 0.66
COPAP53621 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.15■□□□□ 0.66
COPAP53621 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.15■□□□□ 0.66
COPAP53621 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 GCSHP2-201ENST00000560971 527 ntBASIC19.15■□□□□ 0.66
COPAP53621 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.15■□□□□ 0.66
COPAP53621 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC19.15■□□□□ 0.66
COPAP53621 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
COPAP53621 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COPAP53621 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.14■□□□□ 0.66
COPAP53621 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
COPAP53621 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
COPAP53621 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.14■□□□□ 0.65
COPAP53621 BET1L-202ENST00000332865 533 ntTSL 5 BASIC19.14■□□□□ 0.65
COPAP53621 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC19.14■□□□□ 0.65
COPAP53621 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.14■□□□□ 0.65
COPAP53621 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 CR769767.2-201ENST00000622735 460 ntBASIC19.14■□□□□ 0.65
COPAP53621 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.14■□□□□ 0.65
COPAP53621 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
COPAP53621 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.14■□□□□ 0.65
COPAP53621 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.14■□□□□ 0.65
COPAP53621 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
COPAP53621 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.14■□□□□ 0.65
COPAP53621 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.14■□□□□ 0.65
COPAP53621 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COPAP53621 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COPAP53621 AL049812.1-201ENST00000432563 2267 ntBASIC19.13■□□□□ 0.65
COPAP53621 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
COPAP53621 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.13■□□□□ 0.65
COPAP53621 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COPAP53621 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COPAP53621 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.13■□□□□ 0.65
COPAP53621 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COPAP53621 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.13■□□□□ 0.65
COPAP53621 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.13■□□□□ 0.65
COPAP53621 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.13■□□□□ 0.65
COPAP53621 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.13■□□□□ 0.65
COPAP53621 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms