Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 KRT16P1-201ENST00000399124 1418 ntBASIC15.17■□□□□ 0.02
CDX1P47902 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.17■□□□□ 0.02
CDX1P47902 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CDX1P47902 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CDX1P47902 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC15.16■□□□□ 0.02
CDX1P47902 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CDX1P47902 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CDX1P47902 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC15.16■□□□□ 0.02
CDX1P47902 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC15.16■□□□□ 0.02
CDX1P47902 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.16■□□□□ 0.02
CDX1P47902 GXYLT1P3-201ENST00000453058 1193 ntBASIC15.16■□□□□ 0.02
CDX1P47902 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 AP003071.4-201ENST00000562276 1284 ntBASIC15.16■□□□□ 0.02
CDX1P47902 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.16■□□□□ 0.02
CDX1P47902 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.16■□□□□ 0.02
CDX1P47902 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.16■□□□□ 0.02
CDX1P47902 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 SNX21-213ENST00000614929 587 ntTSL 5 BASIC15.16■□□□□ 0.02
CDX1P47902 AC073912.3-201ENST00000624414 853 ntBASIC15.16■□□□□ 0.02
CDX1P47902 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.16■□□□□ 0.02
CDX1P47902 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC15.16■□□□□ 0.02
CDX1P47902 MST1L-201ENST00000442552 2185 ntBASIC15.16■□□□□ 0.02
CDX1P47902 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.16■□□□□ 0.02
CDX1P47902 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.16■□□□□ 0.02
CDX1P47902 USP49-202ENST00000373010 2446 ntTSL 5 BASIC15.16■□□□□ 0.02
CDX1P47902 AL513477.1-201ENST00000602865 2407 ntBASIC15.16■□□□□ 0.02
CDX1P47902 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CDX1P47902 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CDX1P47902 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC15.16■□□□□ 0.02
CDX1P47902 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CDX1P47902 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.16■□□□□ 0.02
CDX1P47902 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDX1P47902 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CDX1P47902 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CDX1P47902 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDX1P47902 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDX1P47902 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDX1P47902 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 NUDT16P1-203ENST00000513809 620 ntBASIC15.15■□□□□ 0.02
CDX1P47902 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC15.15■□□□□ 0.02
CDX1P47902 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CDX1P47902 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC15.15■□□□□ 0.02
CDX1P47902 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
CDX1P47902 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC15.15■□□□□ 0.02
CDX1P47902 AL445675.2-201ENST00000620291 557 ntBASIC15.15■□□□□ 0.02
CDX1P47902 CR392000.1-201ENST00000624770 1228 ntBASIC15.15■□□□□ 0.02
CDX1P47902 DECR2-212ENST00000627716 352 ntTSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDX1P47902 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CDX1P47902 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDX1P47902 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CDX1P47902 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 AC009237.14-201ENST00000609975 1594 ntBASIC15.15■□□□□ 0.02
CDX1P47902 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CDX1P47902 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDX1P47902 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
CDX1P47902 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CDX1P47902 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CDX1P47902 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.14■□□□□ 0.01
CDX1P47902 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
CDX1P47902 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC15.14■□□□□ 0.01
CDX1P47902 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 AC008894.3-201ENST00000624324 3103 ntBASIC15.14■□□□□ 0.01
CDX1P47902 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CDX1P47902 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC15.14■□□□□ 0.01
CDX1P47902 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CDX1P47902 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CDX1P47902 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDX1P47902 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC15.14■□□□□ 0.01
CDX1P47902 NME1-207ENST00000480143 964 ntTSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms