Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL9A1P20849 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
COL9A1P20849 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
COL9A1P20849 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL9A1P20849 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL9A1P20849 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC19.07■□□□□ 0.64
COL9A1P20849 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL9A1P20849 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
COL9A1P20849 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL9A1P20849 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.07■□□□□ 0.64
COL9A1P20849 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.07■□□□□ 0.64
COL9A1P20849 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.07■□□□□ 0.64
COL9A1P20849 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL9A1P20849 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.07■□□□□ 0.64
COL9A1P20849 AL591684.3-201ENST00000605187 298 ntBASIC19.07■□□□□ 0.64
COL9A1P20849 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
COL9A1P20849 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL9A1P20849 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.07■□□□□ 0.64
COL9A1P20849 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.07■□□□□ 0.64
COL9A1P20849 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.07■□□□□ 0.64
COL9A1P20849 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.07■□□□□ 0.64
COL9A1P20849 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.07■□□□□ 0.64
COL9A1P20849 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.07■□□□□ 0.64
COL9A1P20849 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL9A1P20849 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
COL9A1P20849 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL9A1P20849 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL9A1P20849 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL9A1P20849 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
COL9A1P20849 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC19.06■□□□□ 0.64
COL9A1P20849 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
COL9A1P20849 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
COL9A1P20849 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.06■□□□□ 0.64
COL9A1P20849 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC19.06■□□□□ 0.64
COL9A1P20849 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.06■□□□□ 0.64
COL9A1P20849 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC19.06■□□□□ 0.64
COL9A1P20849 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.06■□□□□ 0.64
COL9A1P20849 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC19.06■□□□□ 0.64
COL9A1P20849 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.06■□□□□ 0.64
COL9A1P20849 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.06■□□□□ 0.64
COL9A1P20849 AL359881.2-201ENST00000602973 570 ntBASIC19.06■□□□□ 0.64
COL9A1P20849 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL9A1P20849 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.06■□□□□ 0.64
COL9A1P20849 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 AL391807.1-203ENST00000604392 2365 ntBASIC19.06■□□□□ 0.64
COL9A1P20849 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL9A1P20849 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.06■□□□□ 0.64
COL9A1P20849 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL9A1P20849 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.06■□□□□ 0.64
COL9A1P20849 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.05■□□□□ 0.64
COL9A1P20849 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.05■□□□□ 0.64
COL9A1P20849 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.05■□□□□ 0.64
COL9A1P20849 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.05■□□□□ 0.64
COL9A1P20849 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
COL9A1P20849 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.05■□□□□ 0.64
COL9A1P20849 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
COL9A1P20849 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.05■□□□□ 0.64
COL9A1P20849 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.05■□□□□ 0.64
COL9A1P20849 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 AC005829.1-201ENST00000570002 483 ntBASIC19.05■□□□□ 0.64
COL9A1P20849 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
COL9A1P20849 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
COL9A1P20849 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.05■□□□□ 0.64
COL9A1P20849 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL9A1P20849 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL9A1P20849 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL9A1P20849 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL9A1P20849 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.04■□□□□ 0.64
COL9A1P20849 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.04■□□□□ 0.64
COL9A1P20849 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL9A1P20849 CNN2P11-201ENST00000429351 262 ntBASIC19.04■□□□□ 0.64
COL9A1P20849 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.04■□□□□ 0.64
COL9A1P20849 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL9A1P20849 AC005225.4-201ENST00000557330 545 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms