Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MMP3P08254 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MMP3P08254 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
MMP3P08254 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
MMP3P08254 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.55■□□□□ 0.88
MMP3P08254 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.55■□□□□ 0.88
MMP3P08254 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
MMP3P08254 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.55■□□□□ 0.88
MMP3P08254 AC091607.1-201ENST00000490318 1060 ntBASIC20.55■□□□□ 0.88
MMP3P08254 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.55■□□□□ 0.88
MMP3P08254 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.55■□□□□ 0.88
MMP3P08254 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.55■□□□□ 0.88
MMP3P08254 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.55■□□□□ 0.88
MMP3P08254 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.55■□□□□ 0.88
MMP3P08254 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.55■□□□□ 0.88
MMP3P08254 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
MMP3P08254 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
MMP3P08254 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.55■□□□□ 0.88
MMP3P08254 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.55■□□□□ 0.88
MMP3P08254 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.54■□□□□ 0.88
MMP3P08254 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.54■□□□□ 0.88
MMP3P08254 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
MMP3P08254 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
MMP3P08254 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.54■□□□□ 0.88
MMP3P08254 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
MMP3P08254 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.54■□□□□ 0.88
MMP3P08254 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.54■□□□□ 0.88
MMP3P08254 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.54■□□□□ 0.88
MMP3P08254 AL160237.2-201ENST00000556165 472 ntBASIC20.54■□□□□ 0.88
MMP3P08254 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.54■□□□□ 0.88
MMP3P08254 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.54■□□□□ 0.88
MMP3P08254 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.54■□□□□ 0.88
MMP3P08254 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
MMP3P08254 AC004263.2-201ENST00000617183 678 ntBASIC20.54■□□□□ 0.88
MMP3P08254 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.54■□□□□ 0.88
MMP3P08254 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.54■□□□□ 0.88
MMP3P08254 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.54■□□□□ 0.88
MMP3P08254 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.54■□□□□ 0.88
MMP3P08254 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
MMP3P08254 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 NSUN5P1-202ENST00000421140 1535 ntBASIC20.53■□□□□ 0.88
MMP3P08254 NSUN5P2-203ENST00000457352 1529 ntBASIC20.53■□□□□ 0.88
MMP3P08254 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
MMP3P08254 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
MMP3P08254 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
MMP3P08254 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 VENTXP7-201ENST00000475503 772 ntBASIC20.53■□□□□ 0.88
MMP3P08254 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.53■□□□□ 0.88
MMP3P08254 AC083906.6-201ENST00000641366 219 ntBASIC20.53■□□□□ 0.88
MMP3P08254 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 AL049812.1-201ENST00000432563 2267 ntBASIC20.53■□□□□ 0.88
MMP3P08254 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
MMP3P08254 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.53■□□□□ 0.88
MMP3P08254 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
MMP3P08254 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
MMP3P08254 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
MMP3P08254 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
MMP3P08254 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.52■□□□□ 0.88
MMP3P08254 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.52■□□□□ 0.88
MMP3P08254 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
MMP3P08254 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
MMP3P08254 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.52■□□□□ 0.88
MMP3P08254 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
MMP3P08254 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms