Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CDX4O14627 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CDX4O14627 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CDX4O14627 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CDX4O14627 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CDX4O14627 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CDX4O14627 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.87■□□□□ 0.45
CDX4O14627 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CDX4O14627 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX4O14627 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CDX4O14627 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CDX4O14627 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.87■□□□□ 0.45
CDX4O14627 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CDX4O14627 YBX2P1-201ENST00000394192 760 ntBASIC17.87■□□□□ 0.45
CDX4O14627 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.87■□□□□ 0.45
CDX4O14627 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX4O14627 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX4O14627 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX4O14627 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX4O14627 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.87■□□□□ 0.45
CDX4O14627 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CDX4O14627 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX4O14627 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
CDX4O14627 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CDX4O14627 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CDX4O14627 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
CDX4O14627 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CDX4O14627 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.87■□□□□ 0.45
CDX4O14627 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CDX4O14627 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.86■□□□□ 0.45
CDX4O14627 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.86■□□□□ 0.45
CDX4O14627 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.86■□□□□ 0.45
CDX4O14627 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
CDX4O14627 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
CDX4O14627 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
CDX4O14627 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.86■□□□□ 0.45
CDX4O14627 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.86■□□□□ 0.45
CDX4O14627 RPS2P1-201ENST00000434010 821 ntBASIC17.86■□□□□ 0.45
CDX4O14627 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.86■□□□□ 0.45
CDX4O14627 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.86■□□□□ 0.45
CDX4O14627 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.86■□□□□ 0.45
CDX4O14627 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.86■□□□□ 0.45
CDX4O14627 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.86■□□□□ 0.45
CDX4O14627 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.86■□□□□ 0.45
CDX4O14627 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CDX4O14627 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
CDX4O14627 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.86■□□□□ 0.45
CDX4O14627 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
CDX4O14627 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CDX4O14627 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.86■□□□□ 0.45
CDX4O14627 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.86■□□□□ 0.45
CDX4O14627 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
CDX4O14627 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.85■□□□□ 0.45
CDX4O14627 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CDX4O14627 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 AC092667.1-201ENST00000434301 2586 ntBASIC17.85■□□□□ 0.45
CDX4O14627 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.85■□□□□ 0.45
CDX4O14627 KRT18P3-201ENST00000451602 1288 ntBASIC17.85■□□□□ 0.45
CDX4O14627 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.85■□□□□ 0.45
CDX4O14627 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 AC112777.1-201ENST00000540175 1423 ntBASIC17.85■□□□□ 0.45
CDX4O14627 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.85■□□□□ 0.45
CDX4O14627 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.85■□□□□ 0.45
CDX4O14627 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 AL357033.4-201ENST00000617703 1807 ntBASIC17.85■□□□□ 0.45
CDX4O14627 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.85■□□□□ 0.45
CDX4O14627 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
CDX4O14627 AC083906.6-201ENST00000641366 219 ntBASIC17.85■□□□□ 0.45
CDX4O14627 AC079781.4-201ENST00000641908 219 ntBASIC17.85■□□□□ 0.45
CDX4O14627 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
CDX4O14627 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.84■□□□□ 0.45
CDX4O14627 INTS4P1-201ENST00000438455 1935 ntBASIC17.84■□□□□ 0.45
CDX4O14627 LINC01521-201ENST00000504184 1943 ntBASIC17.84■□□□□ 0.45
CDX4O14627 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDX4O14627 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.84■□□□□ 0.45
CDX4O14627 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDX4O14627 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
CDX4O14627 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.84■□□□□ 0.45
CDX4O14627 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
CDX4O14627 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms